AT3G49730

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G49730

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00121040	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At1g77360,...	0.03	OrthoFinder output from all 47 species
AMTR_s00131p00098210	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At1g13040,...	0.02	OrthoFinder output from all 47 species
AT1G52640	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.04	OrthoFinder output from all 47 species
Aev_g30805	MEE40	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g11133	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g04814	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01029740001	No alias	Pentatricopeptide repeat-containing protein At3g62470,...	0.03	OrthoFinder output from all 47 species
Gb_04017	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	OrthoFinder output from all 47 species
Gb_27355	No alias	Pentatricopeptide repeat-containing protein At5g11310,...	0.03	OrthoFinder output from all 47 species
Gb_31799	No alias	Putative pentatricopeptide repeat-containing protein...	0.01	OrthoFinder output from all 47 species
LOC_Os05g28720.1	LOC_Os05g28720	Pentatricopeptide repeat-containing protein At3g62470,...	0.07	OrthoFinder output from all 47 species
Len_g02855	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_10139g0010	No alias	Pentatricopeptide repeat-containing protein At3g60050...	0.02	OrthoFinder output from all 47 species
MA_9740107g0010	No alias	Pentatricopeptide repeat-containing protein At5g15010,...	0.03	OrthoFinder output from all 47 species
Nbi_g01378	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Solyc01g007267.1.1	Solyc01g007267	Pentatricopeptide repeat-containing protein At3g49730...	0.04	OrthoFinder output from all 47 species
Solyc01g097130.4.1	Solyc01g097130	Pentatricopeptide repeat-containing protein At3g62470,...	0.05	OrthoFinder output from all 47 species
Solyc03g112560.4.1	Solyc03g112560	Pentatricopeptide repeat-containing protein At1g80550,...	0.04	OrthoFinder output from all 47 species
Solyc03g116540.1.1	Solyc03g116540	Pentatricopeptide repeat-containing protein At1g52640,...	0.03	OrthoFinder output from all 47 species
Solyc04g076370.4.1	Solyc04g076370	Pentatricopeptide repeat-containing protein At2g27800,...	0.02	OrthoFinder output from all 47 species
Solyc04g081950.4.1	Solyc04g081950	Pentatricopeptide repeat-containing protein At1g20300,...	0.03	OrthoFinder output from all 47 species
Solyc10g049570.3.1	Solyc10g049570	Pentatricopeptide repeat-containing protein At2g13420,...	0.03	OrthoFinder output from all 47 species
Solyc11g071670.2.1	Solyc11g071670	Putative pentatricopeptide repeat-containing protein...	0.05	OrthoFinder output from all 47 species
Spa_g12536	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e013118_P001	Zm00001e013118	Pentatricopeptide repeat-containing protein At3g61360...	0.04	OrthoFinder output from all 47 species
Zm00001e021940_P001	Zm00001e021940	Pentatricopeptide repeat-containing protein At5g18390,...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006310	DNA recombination	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007131	reciprocal meiotic recombination	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009308	amine metabolic process	None	Extended
BP	GO:0009560	embryo sac egg cell differentiation	RCA	Interproscan
BP	GO:0009690	cytokinin metabolic process	None	Extended
BP	GO:0009691	cytokinin biosynthetic process	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010817	regulation of hormone levels	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035825	homologous recombination	None	Extended
BP	GO:0042445	hormone metabolic process	None	Extended
BP	GO:0042446	hormone biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140527	reciprocal homologous recombination	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000075	cell cycle checkpoint signaling	IEP	HCCA
BP	GO:0000226	microtubule cytoskeleton organization	IEP	HCCA
BP	GO:0000910	cytokinesis	IEP	HCCA
BP	GO:0000911	cytokinesis by cell plate formation	IEP	HCCA
CC	GO:0005635	nuclear envelope	IEP	HCCA
CC	GO:0005654	nucleoplasm	IEP	HCCA
CC	GO:0005768	endosome	IEP	HCCA
CC	GO:0005794	Golgi apparatus	IEP	HCCA
CC	GO:0005802	trans-Golgi network	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007010	cytoskeleton organization	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007088	regulation of mitotic nuclear division	IEP	HCCA
BP	GO:0007093	mitotic cell cycle checkpoint signaling	IEP	HCCA
BP	GO:0007094	mitotic spindle assembly checkpoint signaling	IEP	HCCA
MF	GO:0008483	transaminase activity	IEP	HCCA
CC	GO:0009504	cell plate	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010639	negative regulation of organelle organization	IEP	HCCA
BP	GO:0010948	negative regulation of cell cycle process	IEP	HCCA
BP	GO:0010965	regulation of mitotic sister chromatid separation	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	HCCA
MF	GO:0016782	transferase activity, transferring sulphur-containing groups	IEP	HCCA
MF	GO:0016783	sulfurtransferase activity	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
BP	GO:0030071	regulation of mitotic metaphase/anaphase transition	IEP	HCCA
MF	GO:0031071	cysteine desulfurase activity	IEP	HCCA
CC	GO:0031410	cytoplasmic vesicle	IEP	HCCA
BP	GO:0031577	spindle checkpoint signaling	IEP	HCCA
CC	GO:0031982	vesicle	IEP	HCCA
CC	GO:0031984	organelle subcompartment	IEP	HCCA
BP	GO:0033043	regulation of organelle organization	IEP	HCCA
BP	GO:0033044	regulation of chromosome organization	IEP	HCCA
BP	GO:0033045	regulation of sister chromatid segregation	IEP	HCCA
BP	GO:0033046	negative regulation of sister chromatid segregation	IEP	HCCA
BP	GO:0033047	regulation of mitotic sister chromatid segregation	IEP	HCCA
BP	GO:0033048	negative regulation of mitotic sister chromatid segregation	IEP	HCCA
MF	GO:0042393	histone binding	IEP	HCCA
BP	GO:0045786	negative regulation of cell cycle	IEP	HCCA
BP	GO:0045839	negative regulation of mitotic nuclear division	IEP	HCCA
BP	GO:0045841	negative regulation of mitotic metaphase/anaphase transition	IEP	HCCA
BP	GO:0045930	negative regulation of mitotic cell cycle	IEP	HCCA
MF	GO:0046982	protein heterodimerization activity	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051129	negative regulation of cellular component organization	IEP	HCCA
BP	GO:0051783	regulation of nuclear division	IEP	HCCA
BP	GO:0051784	negative regulation of nuclear division	IEP	HCCA
BP	GO:0051983	regulation of chromosome segregation	IEP	HCCA
BP	GO:0051985	negative regulation of chromosome segregation	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0071173	spindle assembly checkpoint signaling	IEP	HCCA
BP	GO:0071174	mitotic spindle checkpoint signaling	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
CC	GO:0097708	intracellular vesicle	IEP	HCCA
CC	GO:0098791	Golgi apparatus subcompartment	IEP	HCCA
BP	GO:1901988	negative regulation of cell cycle phase transition	IEP	HCCA
BP	GO:1901991	negative regulation of mitotic cell cycle phase transition	IEP	HCCA
BP	GO:1902099	regulation of metaphase/anaphase transition of cell cycle	IEP	HCCA
BP	GO:1902100	negative regulation of metaphase/anaphase transition of cell cycle	IEP	HCCA
BP	GO:1903047	mitotic cell cycle process	IEP	HCCA
BP	GO:1905818	regulation of chromosome separation	IEP	HCCA
BP	GO:1905819	negative regulation of chromosome separation	IEP	HCCA
BP	GO:2000816	negative regulation of mitotic sister chromatid separation	IEP	HCCA
BP	GO:2001251	negative regulation of chromosome organization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	269	318
IPR002885	Pentatricopeptide_repeat	341	380
IPR002885	Pentatricopeptide_repeat	410	457
IPR002885	Pentatricopeptide_repeat	197	229
IPR002885	Pentatricopeptide_repeat	233	263
IPR002885	Pentatricopeptide_repeat	523	551

External Links

No external refs found!

AT3G49730

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation