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  5. AT3G49570

AT3G49570 (LSU3)


Aliases : LSU3

Description : response to low sulfur 3


Gene families : OG0003820 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003820_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G49570

Target Alias Description ECC score Gene Family Method Actions
AT3G49580 LSU1 response to low sulfur 1 0.03 OrthoFinder output from all 47 species
AT5G24660 LSU2 response to low sulfur 2 0.01 OrthoFinder output from all 47 species
Aob_g11330 No alias regulatory protein *(LSU) of sulfate homeostasis &... 0.04 OrthoFinder output from all 47 species
Aob_g14877 No alias regulatory protein *(LSU) of sulfate homeostasis &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene24735.t1 Aspi01Gene24735 regulatory protein *(LSU) of sulfate homeostasis &... 0.04 OrthoFinder output from all 47 species
Ceric.09G096400.1 Ceric.09G096400 regulatory protein *(LSU) of sulfate homeostasis &... 0.04 OrthoFinder output from all 47 species
Ehy_g08146 No alias regulatory protein *(LSU) of sulfate homeostasis &... 0.04 OrthoFinder output from all 47 species
Ehy_g29866 No alias regulatory protein *(LSU) of sulfate homeostasis &... 0.02 OrthoFinder output from all 47 species
Gb_18060 LSU2 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Gb_18061 LSU3 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Gb_25232 LSU2 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Gb_25233 LSU2 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os02g03710.1 LSU3, LOC_Os02g03710 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os10g36580.1 LSU3, LOC_Os10g36580 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_122497g0010 LSU4 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Pir_g21148 LSU3 regulatory protein *(LSU) of sulfate homeostasis &... 0.04 OrthoFinder output from all 47 species
Pnu_g18871 No alias regulatory protein *(LSU) of sulfate homeostasis &... 0.05 OrthoFinder output from all 47 species
Ppi_g24652 No alias regulatory protein *(LSU) of sulfate homeostasis &... 0.02 OrthoFinder output from all 47 species
Solyc03g096770.1.1 LSU2, Solyc03g096770 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Solyc03g096780.1.1 LSU3, Solyc03g096780 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Zm00001e004387_P001 LSU3, Zm00001e004387 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e012566_P001 LSU3, Zm00001e012566 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Zm00001e013550_P001 LSU3, Zm00001e013550 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005575 cellular_component ND Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0002682 regulation of immune system process IEP HCCA
BP GO:0002831 regulation of response to biotic stimulus IEP HCCA
MF GO:0005102 signaling receptor binding IEP HCCA
CC GO:0005615 extracellular space IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008083 growth factor activity IEP HCCA
BP GO:0008284 positive regulation of cell population proliferation IEP HCCA
BP GO:0009685 gibberellin metabolic process IEP HCCA
BP GO:0009723 response to ethylene IEP HCCA
BP GO:0009738 abscisic acid-activated signaling pathway IEP HCCA
BP GO:0009755 hormone-mediated signaling pathway IEP HCCA
BP GO:0009863 salicylic acid mediated signaling pathway IEP HCCA
MF GO:0009975 cyclase activity IEP HCCA
BP GO:0010359 regulation of anion channel activity IEP HCCA
BP GO:0010363 regulation of plant-type hypersensitive response IEP HCCA
BP GO:0010941 regulation of cell death IEP HCCA
BP GO:0016101 diterpenoid metabolic process IEP HCCA
MF GO:0016706 2-oxoglutarate-dependent dioxygenase activity IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
BP GO:0022622 root system development IEP HCCA
BP GO:0022898 regulation of transmembrane transporter activity IEP HCCA
MF GO:0030545 signaling receptor regulator activity IEP HCCA
MF GO:0030546 signaling receptor activator activity IEP HCCA
BP GO:0031347 regulation of defense response IEP HCCA
BP GO:0032101 regulation of response to external stimulus IEP HCCA
BP GO:0032409 regulation of transporter activity IEP HCCA
BP GO:0032412 regulation of monoatomic ion transmembrane transporter activity IEP HCCA
BP GO:0033037 polysaccharide localization IEP HCCA
BP GO:0034762 regulation of transmembrane transport IEP HCCA
BP GO:0034765 regulation of monoatomic ion transmembrane transport IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0042127 regulation of cell population proliferation IEP HCCA
BP GO:0043067 regulation of programmed cell death IEP HCCA
BP GO:0043903 regulation of biological process involved in symbiotic interaction IEP HCCA
BP GO:0044070 regulation of monoatomic anion transport IEP HCCA
BP GO:0045088 regulation of innate immune response IEP HCCA
MF GO:0045543 gibberellin 2-beta-dioxygenase activity IEP HCCA
MF GO:0046423 allene-oxide cyclase activity IEP HCCA
MF GO:0048018 receptor ligand activity IEP HCCA
BP GO:0048527 lateral root development IEP HCCA
BP GO:0048528 post-embryonic root development IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0050776 regulation of immune response IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
BP GO:0051302 regulation of cell division IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0052542 defense response by callose deposition IEP HCCA
BP GO:0052545 callose localization IEP HCCA
MF GO:0052635 C-20 gibberellin 2-beta-dioxygenase activity IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0080134 regulation of response to stress IEP HCCA
BP GO:0080135 regulation of cellular response to stress IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
BP GO:0090696 post-embryonic plant organ development IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
BP GO:1903959 regulation of monoatomic anion transmembrane transport IEP HCCA

No InterPro domains available for this sequence

No external refs found!