Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG0003888 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003888_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Adi_g106591 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Dde_g16472 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01028827001 | No alias | Uncharacterized protein At3g49140 OS=Arabidopsis thaliana | 0.06 | OrthoFinder output from all 47 species | |
LOC_Os11g34130.1 | LOC_Os11g34130 | Uncharacterized protein At3g49140 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
Len_g40386 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Ore_g33423 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0085.g018352 | No alias | not classified & original description: CDS=139-1758 | 0.03 | OrthoFinder output from all 47 species | |
Solyc03g007590.4.1 | Solyc03g007590 | Uncharacterized protein At3g49140 OS=Arabidopsis... | 0.08 | OrthoFinder output from all 47 species | |
Zm00001e024190_P001 | Zm00001e024190 | Uncharacterized protein At3g49140 OS=Arabidopsis... | 0.07 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0005634 | nucleus | ISM | Interproscan |
BP | GO:0010027 | thylakoid membrane organization | RCA | Interproscan |
BP | GO:0019288 | isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | RCA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000372 | Group I intron splicing | IEP | HCCA |
BP | GO:0000373 | Group II intron splicing | IEP | HCCA |
BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | HCCA |
BP | GO:0000376 | RNA splicing, via transesterification reactions with guanosine as nucleophile | IEP | HCCA |
BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | HCCA |
BP | GO:0003006 | developmental process involved in reproduction | IEP | HCCA |
MF | GO:0004518 | nuclease activity | IEP | HCCA |
MF | GO:0004519 | endonuclease activity | IEP | HCCA |
MF | GO:0004521 | endoribonuclease activity | IEP | HCCA |
MF | GO:0004540 | ribonuclease activity | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
BP | GO:0006364 | rRNA processing | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006397 | mRNA processing | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0006996 | organelle organization | IEP | HCCA |
BP | GO:0008356 | asymmetric cell division | IEP | HCCA |
BP | GO:0008380 | RNA splicing | IEP | HCCA |
MF | GO:0008565 | obsolete protein transporter activity | IEP | HCCA |
CC | GO:0009507 | chloroplast | IEP | HCCA |
CC | GO:0009528 | plastid inner membrane | IEP | HCCA |
CC | GO:0009536 | plastid | IEP | HCCA |
BP | GO:0009657 | plastid organization | IEP | HCCA |
BP | GO:0009658 | chloroplast organization | IEP | HCCA |
CC | GO:0009706 | chloroplast inner membrane | IEP | HCCA |
BP | GO:0009902 | chloroplast relocation | IEP | HCCA |
BP | GO:0010239 | chloroplast mRNA processing | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
BP | GO:0016226 | iron-sulfur cluster assembly | IEP | HCCA |
BP | GO:0016556 | mRNA modification | IEP | HCCA |
BP | GO:0019750 | chloroplast localization | IEP | HCCA |
CC | GO:0019866 | organelle inner membrane | IEP | HCCA |
BP | GO:0031163 | metallo-sulfur cluster assembly | IEP | HCCA |
BP | GO:0031425 | chloroplast RNA processing | IEP | HCCA |
CC | GO:0031969 | chloroplast membrane | IEP | HCCA |
BP | GO:0032501 | multicellular organismal process | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0042793 | plastid transcription | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
BP | GO:0045036 | protein targeting to chloroplast | IEP | HCCA |
BP | GO:0045037 | protein import into chloroplast stroma | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0048316 | seed development | IEP | HCCA |
BP | GO:0048481 | plant ovule development | IEP | HCCA |
BP | GO:0048608 | reproductive structure development | IEP | HCCA |
BP | GO:0048856 | anatomical structure development | IEP | HCCA |
BP | GO:0051301 | cell division | IEP | HCCA |
BP | GO:0051640 | organelle localization | IEP | HCCA |
BP | GO:0051644 | plastid localization | IEP | HCCA |
BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
BP | GO:0051656 | establishment of organelle localization | IEP | HCCA |
BP | GO:0051667 | establishment of plastid localization | IEP | HCCA |
BP | GO:0065002 | intracellular protein transmembrane transport | IEP | HCCA |
BP | GO:0071806 | protein transmembrane transport | IEP | HCCA |
BP | GO:0072596 | establishment of protein localization to chloroplast | IEP | HCCA |
BP | GO:0072598 | protein localization to chloroplast | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
BP | GO:1901259 | chloroplast rRNA processing | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
No InterPro domains available for this sequence
No external refs found! |