AT3G49140


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0003888 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003888_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G49140

Target Alias Description ECC score Gene Family Method Actions
Adi_g106591 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g16472 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01028827001 No alias Uncharacterized protein At3g49140 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
LOC_Os11g34130.1 LOC_Os11g34130 Uncharacterized protein At3g49140 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Len_g40386 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g33423 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0085.g018352 No alias not classified & original description: CDS=139-1758 0.03 OrthoFinder output from all 47 species
Solyc03g007590.4.1 Solyc03g007590 Uncharacterized protein At3g49140 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Zm00001e024190_P001 Zm00001e024190 Uncharacterized protein At3g49140 OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
BP GO:0010027 thylakoid membrane organization RCA Interproscan
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway RCA Interproscan
Type GO Term Name Evidence Source
BP GO:0000372 Group I intron splicing IEP HCCA
BP GO:0000373 Group II intron splicing IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000376 RNA splicing, via transesterification reactions with guanosine as nucleophile IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008356 asymmetric cell division IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008565 obsolete protein transporter activity IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009528 plastid inner membrane IEP HCCA
CC GO:0009536 plastid IEP HCCA
BP GO:0009657 plastid organization IEP HCCA
BP GO:0009658 chloroplast organization IEP HCCA
CC GO:0009706 chloroplast inner membrane IEP HCCA
BP GO:0009902 chloroplast relocation IEP HCCA
BP GO:0010239 chloroplast mRNA processing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
BP GO:0019750 chloroplast localization IEP HCCA
CC GO:0019866 organelle inner membrane IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
BP GO:0031425 chloroplast RNA processing IEP HCCA
CC GO:0031969 chloroplast membrane IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0042793 plastid transcription IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0045036 protein targeting to chloroplast IEP HCCA
BP GO:0045037 protein import into chloroplast stroma IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048316 seed development IEP HCCA
BP GO:0048481 plant ovule development IEP HCCA
BP GO:0048608 reproductive structure development IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0051301 cell division IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0051644 plastid localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051656 establishment of organelle localization IEP HCCA
BP GO:0051667 establishment of plastid localization IEP HCCA
BP GO:0065002 intracellular protein transmembrane transport IEP HCCA
BP GO:0071806 protein transmembrane transport IEP HCCA
BP GO:0072596 establishment of protein localization to chloroplast IEP HCCA
BP GO:0072598 protein localization to chloroplast IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
BP GO:1901259 chloroplast rRNA processing IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!