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  5. AT3G48940

AT3G48940


Description : Remorin family protein


Gene families : OG0000526 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000526_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Cluster_25
Type Description Actions
Neighborhood HRR: AT3G48940
Cluster HCCA:

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00257810 evm_27.TU.AmTr_v1... Remorin OS=Solanum tuberosum 0.03 OrthoFinder output from all 47 species
Adi_g102519 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g112019 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g03639 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g04326 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g20577 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g33238 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g02159 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g09386 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g25552 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07848 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g50861 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g70234 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0217.g058560 No alias not classified & original description: CDS=1-231 0.02 OrthoFinder output from all 47 species
Azfi_s0528.g075784 No alias not classified & original description: CDS=146-685 0.03 OrthoFinder output from all 47 species
Azfi_s2817.g113172 No alias not classified & original description: CDS=1-291 0.01 OrthoFinder output from all 47 species
Ceric.04G101900.1 Ceric.04G101900 not classified & original description: pacid=50631891... 0.03 OrthoFinder output from all 47 species
Ceric.06G045700.1 Ceric.06G045700 not classified & original description: pacid=50619672... 0.04 OrthoFinder output from all 47 species
Ceric.11G018300.1 Ceric.11G018300 not classified & original description: pacid=50595329... 0.03 OrthoFinder output from all 47 species
Ceric.14G035300.1 Ceric.14G035300 not classified & original description: pacid=50633681... 0.03 OrthoFinder output from all 47 species
Ceric.35G046700.1 Ceric.35G046700 not classified & original description: pacid=50581722... 0.03 OrthoFinder output from all 47 species
Dac_g12380 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g12729 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07290 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g42996 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g13372 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g48279 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01019785001 No alias Remorin OS=Solanum tuberosum 0.09 OrthoFinder output from all 47 species
GSVIVT01026869001 No alias Uncharacterized protein At3g61260 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
LOC_Os03g02040.1 LOC_Os03g02040 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Len_g01012 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Len_g08631 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g38326 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g50832 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g57392 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g57393 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g09573 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g20891 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g38113 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_6856247g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g00941 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g10566 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g43675 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g05160 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g16515 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g04721 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g35103 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g01189 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g25809 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g47315 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g06625 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g14522 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g24973 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g06776 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g60948 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005937 No alias not classified & original description: CDS=1-372 0.04 OrthoFinder output from all 47 species
Sam_g08273 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g20100 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g48237 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc06g035900.1.1 Solyc06g035900 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Spa_g00381 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g08097 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g16772 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g22252 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g47427 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g46489 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e015240_P001 Zm00001e015240 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
CC GO:0005886 plasma membrane ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
BP GO:0048765 root hair cell differentiation RCA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
CC GO:0000325 plant-type vacuole IEP HCCA
BP GO:0002238 response to molecule of fungal origin IEP HCCA
MF GO:0005275 amine transmembrane transporter activity IEP HCCA
MF GO:0005372 water transmembrane transporter activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006826 iron ion transport IEP HCCA
BP GO:0007043 cell-cell junction assembly IEP HCCA
MF GO:0008417 fucosyltransferase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009267 cellular response to starvation IEP HCCA
BP GO:0009698 phenylpropanoid metabolic process IEP HCCA
BP GO:0009699 phenylpropanoid biosynthetic process IEP HCCA
BP GO:0009806 lignan metabolic process IEP HCCA
BP GO:0009807 lignan biosynthetic process IEP HCCA
BP GO:0009808 lignin metabolic process IEP HCCA
BP GO:0009809 lignin biosynthetic process IEP HCCA
BP GO:0009991 response to extracellular stimulus IEP HCCA
BP GO:0010106 cellular response to iron ion starvation IEP HCCA
BP GO:0010167 response to nitrate IEP HCCA
BP GO:0010345 suberin biosynthetic process IEP HCCA
BP GO:0010383 cell wall polysaccharide metabolic process IEP HCCA
BP GO:0010410 hemicellulose metabolic process IEP HCCA
BP GO:0010413 glucuronoxylan metabolic process IEP HCCA
MF GO:0015200 methylammonium transmembrane transporter activity IEP HCCA
MF GO:0015250 water channel activity IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
BP GO:0015706 nitrate transmembrane transport IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
BP GO:0019748 secondary metabolic process IEP HCCA
BP GO:0031667 response to nutrient levels IEP HCCA
BP GO:0031668 cellular response to extracellular stimulus IEP HCCA
BP GO:0031669 cellular response to nutrient levels IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034329 cell junction assembly IEP HCCA
BP GO:0034330 cell junction organization IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0042594 response to starvation IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
MF GO:0042803 protein homodimerization activity IEP HCCA
CC GO:0042807 central vacuole IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0044038 cell wall macromolecule biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0044550 secondary metabolite biosynthetic process IEP HCCA
BP GO:0045216 cell-cell junction organization IEP HCCA
BP GO:0045491 xylan metabolic process IEP HCCA
BP GO:0045492 xylan biosynthetic process IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
CC GO:0048226 Casparian strip IEP HCCA
BP GO:0048588 developmental cell growth IEP HCCA
BP GO:0048767 root hair elongation IEP HCCA
BP GO:0070589 cellular component macromolecule biosynthetic process IEP HCCA
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP HCCA
BP GO:0071496 cellular response to external stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098661 inorganic anion transmembrane transport IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1902025 nitrate import IEP HCCA
InterPro domains Description Start Stop
IPR005516 Remorin_C 66 170
IPR005518 Remorin_N 19 60
No external refs found!