AT3G47370

Description : Ribosomal protein S10p/S20e family protein

Gene families : OG0001982 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001982_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G47370

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00024p00105050	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.22	OrthoFinder output from all 47 species
Ala_g32242	No alias	component *(uS10) of small ribosomal-subunit (SSU)...	0.18	OrthoFinder output from all 47 species
Ala_g39099	No alias	component *(uS10) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Als_g08426	No alias	component *(uS10) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Als_g22907	No alias	component *(uS10) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Als_g43556	No alias	component *(uS10) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Aob_g00267	No alias	component *(uS10) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Aob_g09489	No alias	component *(uS10) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Aob_g09673	No alias	component *(uS10) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Aop_g23202	No alias	component *(uS10) of small ribosomal-subunit (SSU)...	0.17	OrthoFinder output from all 47 species
Azfi_s0104.g044711	No alias	component *(uS10) of small ribosomal-subunit (SSU)...	0.13	OrthoFinder output from all 47 species
Ceric.10G040000.1	Ceric.10G040000	component *(uS10) of small ribosomal-subunit (SSU)...	0.3	OrthoFinder output from all 47 species
Ceric.35G056300.1	Ceric.35G056300	component *(uS10) of small ribosomal-subunit (SSU)...	0.15	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000842.28	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.31	OrthoFinder output from all 47 species
Cre16.g660150	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.37	OrthoFinder output from all 47 species
Dac_g24720	No alias	component *(uS10) of small ribosomal-subunit (SSU)...	0.12	OrthoFinder output from all 47 species
Dcu_g24923	No alias	component *(uS10) of small ribosomal-subunit (SSU)...	0.23	OrthoFinder output from all 47 species
Dde_g22072	No alias	component *(uS10) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ehy_g10630	No alias	component *(uS10) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
GSVIVT01018553001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.23	OrthoFinder output from all 47 species
LOC_Os03g14530.1	LOC_Os03g14530	component RPS20 of SSU proteome	0.27	OrthoFinder output from all 47 species
LOC_Os06g04290.1	LOC_Os06g04290	component RPS20 of SSU proteome	0.23	OrthoFinder output from all 47 species
LOC_Os10g08930.1	LOC_Os10g08930	component RPS20 of SSU proteome	0.4	OrthoFinder output from all 47 species
Len_g05031	No alias	component *(uS10) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Len_g44279	No alias	component *(uS10) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g04390	No alias	component *(uS10) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g30910	No alias	component *(uS10) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
MA_103406g0010	No alias	component RPS20 of SSU proteome	0.27	OrthoFinder output from all 47 species
MA_10429759g0010	No alias	component RPS20 of SSU proteome	0.31	OrthoFinder output from all 47 species
Mp2g09440.1	No alias	component RPS20 of SSU proteome	0.25	OrthoFinder output from all 47 species
Msp_g18247	No alias	component *(uS10) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Msp_g24560	No alias	component *(uS10) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Msp_g24561	No alias	component *(uS10) of small ribosomal-subunit (SSU)...	0.21	OrthoFinder output from all 47 species
Msp_g36291	No alias	component *(uS10) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Msp_g39729	No alias	component *(uS10) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ore_g21012	No alias	component *(uS10) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Pir_g54843	No alias	component *(uS10) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Pir_g63796	No alias	component *(uS10) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Pnu_g12315	No alias	component *(uS10) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Pp3c1_21860V3.1	Pp3c1_21860	Ribosomal protein S10p/S20e family protein	0.13	OrthoFinder output from all 47 species
Ppi_g28188	No alias	component *(uS10) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0064.g015887	No alias	component *(uS10) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Sam_g14098	No alias	component *(uS10) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Sam_g23471	No alias	component *(uS10) of small ribosomal-subunit (SSU)...	0.24	OrthoFinder output from all 47 species
Sam_g48982	No alias	component *(uS10) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Smo115495	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.18	OrthoFinder output from all 47 species
Solyc01g096580.3.1	Solyc01g096580	component RPS20 of SSU proteome	0.37	OrthoFinder output from all 47 species
Solyc01g096590.3.1	Solyc01g096590	component RPS20 of SSU proteome	0.2	OrthoFinder output from all 47 species
Spa_g27726	No alias	component *(uS10) of small ribosomal-subunit (SSU)...	0.18	OrthoFinder output from all 47 species
Spa_g35271	No alias	component *(uS10) of small ribosomal-subunit (SSU)...	0.01	OrthoFinder output from all 47 species
Tin_g26346	No alias	component *(uS10) of small ribosomal-subunit (SSU)...	0.2	OrthoFinder output from all 47 species
Zm00001e001045_P001	Zm00001e001045	component RPS20 of SSU proteome	0.33	OrthoFinder output from all 47 species
Zm00001e036579_P001	Zm00001e036579	component RPS20 of SSU proteome	0.38	OrthoFinder output from all 47 species
Zm00001e038574_P001	Zm00001e038574	component RPS20 of SSU proteome	0.31	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	IDA	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005840	ribosome	None	Extended
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015935	small ribosomal subunit	ISS	Interproscan
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0022627	cytosolic small ribosomal subunit	IDA	Interproscan
CC	GO:0030054	cell junction	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
BP	GO:0032259	methylation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000469	cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005834	heterotrimeric G-protein complex	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
BP	GO:0010015	root morphogenesis	IEP	HCCA
BP	GO:0010101	post-embryonic root morphogenesis	IEP	HCCA
BP	GO:0010102	lateral root morphogenesis	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0030686	90S preribosome	IEP	HCCA
CC	GO:0032040	small-subunit processome	IEP	HCCA
BP	GO:0032870	cellular response to hormone stimulus	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042274	ribosomal small subunit biogenesis	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0071215	cellular response to abscisic acid stimulus	IEP	HCCA
BP	GO:0071310	cellular response to organic substance	IEP	HCCA
BP	GO:0071396	cellular response to lipid	IEP	HCCA
BP	GO:0071495	cellular response to endogenous stimulus	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
BP	GO:0097306	cellular response to alcohol	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
CC	GO:1905360	GTPase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR027486	Ribosomal_S10_dom	24	118

External Links

No external refs found!

AT3G47370

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation