AT3G46040 (RPS15AD)

Aliases : RPS15AD

Description : ribosomal protein S15A D

Gene families : OG0001724 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001724_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G46040

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00192110	RPS15A,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.13	OrthoFinder output from all 47 species
Adi_g053042	RPS15A	component *(uS8) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ala_g11423	RPS15A	component *(uS8) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ala_g32909	RPS15A	component *(uS8) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Als_g06762	RPS15A	component *(uS8) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Aob_g00427	RPS15A	component *(uS8) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Aop_g23610	RPS15A	component *(uS8) of small ribosomal-subunit (SSU)...	0.14	OrthoFinder output from all 47 species
Aspi01Gene64037.t1	RPS15A, Aspi01Gene64037	component *(uS8) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0035.g025499	RPS15A	component *(uS8) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Azfi_s0073.g037095	RPS15A	component *(uS8) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Azfi_s0078.g038157	RPS15A	component *(uS8) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Ceric.10G044000.1	RPS15A, Ceric.10G044000	component *(uS8) of small ribosomal-subunit (SSU)...	0.2	OrthoFinder output from all 47 species
Ceric.20G029200.1	RPS15A, Ceric.20G029200	component *(uS8) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000158.110	RPS15A	Protein biosynthesis.cytosolic ribosome.small subunit...	0.14	OrthoFinder output from all 47 species
Cre05.g234637	RPS15A	Protein biosynthesis.cytosolic ribosome.small subunit...	0.22	OrthoFinder output from all 47 species
Dac_g06585	RPS15A	component *(uS8) of small ribosomal-subunit (SSU)...	0.14	OrthoFinder output from all 47 species
Dcu_g07279	RPS15A	component *(uS8) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Dcu_g35754	RPS15A	component *(uS8) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Dde_g00146	RPS15A	component *(uS8) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
GSVIVT01016595001	RPS15A	Protein biosynthesis.cytosolic ribosome.small subunit...	0.26	OrthoFinder output from all 47 species
GSVIVT01025622001	RPS15A	Protein biosynthesis.cytosolic ribosome.small subunit...	0.09	OrthoFinder output from all 47 species
Gb_08537	RPS15A	component RPS15a of SSU proteome	0.07	OrthoFinder output from all 47 species
LOC_Os02g27760.1	RPS15A, LOC_Os02g27760	component RPS15a of SSU proteome	0.19	OrthoFinder output from all 47 species
LOC_Os07g10720.1	RPS15A, LOC_Os07g10720	component RPS15a of SSU proteome	0.27	OrthoFinder output from all 47 species
Len_g20800	RPS15A	component *(uS8) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
MA_10427318g0020	RPS15AD	component RPS15a of SSU proteome	0.06	OrthoFinder output from all 47 species
MA_57835g0010	RPS15AD	component RPS15a of SSU proteome	0.08	OrthoFinder output from all 47 species
MA_82191g0010	RPS15AD	component RPS15a of SSU proteome	0.04	OrthoFinder output from all 47 species
Mp8g06510.1	RPS15A	component RPS15a of SSU proteome	0.14	OrthoFinder output from all 47 species
Mp8g13010.1	RPS15A	component RPS15a of SSU proteome	0.16	OrthoFinder output from all 47 species
Msp_g41302	RPS15A	component *(uS8) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Nbi_g05066	RPS15A	component *(uS8) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Pir_g01095	RPS15A	component *(uS8) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pir_g30621	RPS15A	component *(uS8) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pp3c1_4290V3.1	RPS15A, Pp3c1_4290	Ribosomal protein S8 family protein	0.14	OrthoFinder output from all 47 species
Pp3c2_32050V3.1	RPS15A, Pp3c2_32050	Ribosomal protein S8 family protein	0.09	OrthoFinder output from all 47 species
Pp3c3_1140V3.1	RPS15A, Pp3c3_1140	ribosomal protein S15A	0.06	OrthoFinder output from all 47 species
Pp3c4_27540V3.1	RPS15A, Pp3c4_27540	Ribosomal protein S8 family protein	0.09	OrthoFinder output from all 47 species
Ppi_g61636	RPS15A	component *(uS8) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0130.g022035	RPS15A	component *(uS8) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Sam_g00243	No alias	component *(uS8) of small ribosomal-subunit (SSU)...	0.12	OrthoFinder output from all 47 species
Sam_g09163	No alias	component *(uS8) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sam_g09164	No alias	component *(uS8) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sam_g09165	No alias	component *(uS8) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Smo228163	RPS15A	Protein biosynthesis.cytosolic ribosome.small subunit...	0.12	OrthoFinder output from all 47 species
Solyc04g150158.1.1	RPS15A, Solyc04g150158	component RPS15a of SSU proteome	0.18	OrthoFinder output from all 47 species
Solyc04g150159.1.1	RPS15A, Solyc04g150159	component RPS15a of SSU proteome	0.03	OrthoFinder output from all 47 species
Spa_g17843	RPS15A	component *(uS8) of small ribosomal-subunit (SSU)...	0.17	OrthoFinder output from all 47 species
Spa_g17844	RPS15A	component *(uS8) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Spa_g29032	RPS15A	component *(uS8) of small ribosomal-subunit (SSU)...	0.12	OrthoFinder output from all 47 species
Spa_g35400	RPS15A	component *(uS8) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Tin_g22932	RPS15A	component *(uS8) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Zm00001e016394_P001	RPS15A, Zm00001e016394	component RPS15a of SSU proteome	0.25	OrthoFinder output from all 47 species
Zm00001e026115_P001	RPS15A, Zm00001e026115	component RPS15a of SSU proteome	0.24	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005840	ribosome	None	Extended
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015935	small ribosomal subunit	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0022627	cytosolic small ribosomal subunit	IDA	Interproscan
CC	GO:0022627	cytosolic small ribosomal subunit	ISS	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
CC	GO:0016272	prefoldin complex	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000630	Ribosomal_S8	7	130

External Links

No external refs found!

AT3G46040 (RPS15AD)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation