1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT3G45570

AT3G45570


Description : RING/U-box protein with C6HC-type zinc finger domain


Gene families : OG0000695 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000695_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G45570
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
AT2G16520 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.14 OrthoFinder output from all 47 species
AT2G19610 No alias RING/U-box superfamily protein 0.1 OrthoFinder output from all 47 species
AT2G21420 No alias IBR domain containing protein 0.08 OrthoFinder output from all 47 species
AT2G22940 No alias BEST Arabidopsis thaliana protein match is: zinc finger... 0.05 OrthoFinder output from all 47 species
AT2G25360 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
AT2G25370 No alias RING/U-box superfamily protein 0.15 OrthoFinder output from all 47 species
AT2G26135 No alias RING/U-box protein with C6HC-type zinc finger 0.07 OrthoFinder output from all 47 species
AT3G45470 No alias IBR domain containing protein 0.18 OrthoFinder output from all 47 species
AT3G45500 No alias BEST Arabidopsis thaliana protein match is: RING/U-box... 0.09 OrthoFinder output from all 47 species
AT3G45510 No alias RING/U-box protein 0.03 OrthoFinder output from all 47 species
AT3G53690 No alias RING/U-box superfamily protein 0.09 OrthoFinder output from all 47 species
AT5G07640 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021035.20 No alias No description available 0.01 OrthoFinder output from all 47 species
MA_64485g0010 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.04 OrthoFinder output from all 47 species
Solyc01g110080.2.1 Solyc01g110080 plant-specific E3 ubiquitin ligase (RSL/RFA) 0.04 OrthoFinder output from all 47 species
Solyc01g110090.1.1 Solyc01g110090 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm ISM Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP HCCA
BP GO:0006857 oligopeptide transport IEP HCCA
BP GO:0006863 purine nucleobase transport IEP HCCA
BP GO:0015833 peptide transport IEP HCCA
BP GO:0015851 nucleobase transport IEP HCCA
BP GO:0042886 amide transport IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
InterPro domains Description Start Stop
IPR002867 IBR_dom 238 298
IPR002156 RNaseH_domain 30 145
No external refs found!