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AT3G45560


Description : zinc finger (C3HC4-type RING finger) family protein


Gene families : OG0000695 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000695_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G45560
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
AT2G16520 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.11 OrthoFinder output from all 47 species
AT2G19610 No alias RING/U-box superfamily protein 0.09 OrthoFinder output from all 47 species
AT2G21420 No alias IBR domain containing protein 0.07 OrthoFinder output from all 47 species
AT2G22940 No alias BEST Arabidopsis thaliana protein match is: zinc finger... 0.04 OrthoFinder output from all 47 species
AT2G25360 No alias RING/U-box superfamily protein 0.05 OrthoFinder output from all 47 species
AT2G25370 No alias RING/U-box superfamily protein 0.12 OrthoFinder output from all 47 species
AT2G26135 No alias RING/U-box protein with C6HC-type zinc finger 0.03 OrthoFinder output from all 47 species
AT3G45470 No alias IBR domain containing protein 0.14 OrthoFinder output from all 47 species
AT3G45500 No alias BEST Arabidopsis thaliana protein match is: RING/U-box... 0.11 OrthoFinder output from all 47 species
AT3G53690 No alias RING/U-box superfamily protein 0.08 OrthoFinder output from all 47 species
AT5G07640 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021035.20 No alias No description available 0.01 OrthoFinder output from all 47 species
Dde_g00738 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) & original... 0.02 OrthoFinder output from all 47 species
MA_64485g0010 No alias plant-specific E3 ubiquitin ligase (RSL/RFA) 0.03 OrthoFinder output from all 47 species
Solyc01g110080.2.1 Solyc01g110080 plant-specific E3 ubiquitin ligase (RSL/RFA) 0.05 OrthoFinder output from all 47 species
Solyc01g110090.1.1 Solyc01g110090 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0009900 dehiscence IEP HCCA
BP GO:0009901 anther dehiscence IEP HCCA
MF GO:0015095 magnesium ion transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR002156 RNaseH_domain 24 136
IPR002156 RNaseH_domain 322 419
No external refs found!