1. Home
  2. Species
  3. Gingko biloba
  4. Sequence
  5. Gb_39221

Gb_39221


Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 143.0)


Gene families : OG_01_0000364 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000364_tree ,
OG_02_0000134 (LandPlants) Phylogenetic Tree(s): OG_02_0000134_tree ,
OG_03_0000108 (SeedPlants) Phylogenetic Tree(s): OG_03_0000108_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_39221
Cluster HCCA: Cluster_200

Target Alias Description ECC score Gene Family Method Actions
Gb_00288 No alias no hits & (original description: none) 0.01 Archaeplastida
Gb_00434 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_08095 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.01 Archaeplastida
Gb_08402 No alias no hits & (original description: none) 0.04 Archaeplastida
Gb_08666 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.12 Archaeplastida
Gb_09514 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 Archaeplastida
Gb_10876 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
Gb_13443 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.14 Archaeplastida
Gb_15820 No alias no hits & (original description: none) 0.06 Archaeplastida
Gb_16799 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.01 Archaeplastida
Gb_20056 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.14 Archaeplastida
Gb_21118 No alias no hits & (original description: none) 0.2 Archaeplastida
Gb_25995 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 Archaeplastida
Gb_28600 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_33414 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_38122 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_39764 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 Archaeplastida
Gb_40384 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_41697 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 Archaeplastida
Gb_00288 No alias no hits & (original description: none) 0.01 LandPlants
Gb_00434 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 LandPlants
Gb_03181 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 LandPlants
Gb_06261 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.05 LandPlants
Gb_08095 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.01 LandPlants
Gb_08402 No alias no hits & (original description: none) 0.04 LandPlants
Gb_08666 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.12 LandPlants
Gb_09514 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 LandPlants
Gb_10876 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 LandPlants
Gb_13443 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.14 LandPlants
Gb_15820 No alias no hits & (original description: none) 0.06 LandPlants
Gb_16799 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.01 LandPlants
Gb_20056 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.14 LandPlants
Gb_21118 No alias no hits & (original description: none) 0.2 LandPlants
Gb_21972 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 LandPlants
Gb_25995 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 LandPlants
Gb_28600 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 LandPlants
Gb_33414 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 LandPlants
Gb_38122 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 LandPlants
Gb_39764 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 LandPlants
Gb_40384 No alias no hits & (original description: none) 0.02 LandPlants
Gb_41697 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 LandPlants
Gb_00288 No alias no hits & (original description: none) 0.01 SeedPlants
Gb_00434 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 SeedPlants
Gb_03181 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 SeedPlants
Gb_08095 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.01 SeedPlants
Gb_08402 No alias no hits & (original description: none) 0.04 SeedPlants
Gb_08666 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.12 SeedPlants
Gb_09514 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.06 SeedPlants
Gb_10876 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 SeedPlants
Gb_13443 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.14 SeedPlants
Gb_15820 No alias no hits & (original description: none) 0.06 SeedPlants
Gb_16799 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.01 SeedPlants
Gb_20056 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.14 SeedPlants
Gb_21118 No alias no hits & (original description: none) 0.2 SeedPlants
Gb_21972 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 SeedPlants
Gb_25995 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 SeedPlants
Gb_30542 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.04 SeedPlants
Gb_33414 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 SeedPlants
Gb_38122 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 SeedPlants
Gb_39764 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.03 SeedPlants
Gb_40384 No alias no hits & (original description: none) 0.02 SeedPlants
Gb_41697 No alias Retrovirus-related Pol polyprotein from transposon TNT... 0.02 SeedPlants

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR025724 GAG-pre-integrase_dom 59 110
IPR001584 Integrase_cat-core 124 224
No external refs found!