AT3G27640

Description : Transducin/WD40 repeat-like superfamily protein

Gene families : OG0008306 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008306_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G27640
Cluster	HCCA: Cluster_85

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00014p00252440	evm_27.TU.AmTr_v1...	COMPASS-like H3K4 histone methylase component WDR5A...	0.08	OrthoFinder output from all 47 species
Als_g15287	No alias	substrate adaptor of CUL4-based E3 ubiquitin ligase...	0.09	OrthoFinder output from all 47 species
Aspi01Gene04216.t1	Aspi01Gene04216	substrate adaptor of CUL4-based E3 ubiquitin ligase...	0.05	OrthoFinder output from all 47 species
Azfi_s0076.g037840	No alias	substrate adaptor of CUL4-based E3 ubiquitin ligase...	0.04	OrthoFinder output from all 47 species
Ceric.16G026900.1	Ceric.16G026900	substrate adaptor of CUL4-based E3 ubiquitin ligase...	0.06	OrthoFinder output from all 47 species
Cre01.g036100	No alias	No description available	0.03	OrthoFinder output from all 47 species
Dcu_g01530	No alias	substrate adaptor of CUL4-based E3 ubiquitin ligase...	0.09	OrthoFinder output from all 47 species
GSVIVT01032413001	No alias	COMPASS-like H3K4 histone methylase component WDR5A...	0.12	OrthoFinder output from all 47 species
Gb_09523	No alias	no hits & (original description: none)	0.09	OrthoFinder output from all 47 species
LOC_Os03g49200.1	LOC_Os03g49200	no hits & (original description: none)	0.06	OrthoFinder output from all 47 species
Len_g14540	No alias	substrate adaptor of CUL4-based E3 ubiquitin ligase...	0.04	OrthoFinder output from all 47 species
MA_10429760g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_10429760g0020	No alias	no hits & (original description: none)	0.11	OrthoFinder output from all 47 species
Mp8g16590.1	No alias	COMPASS-like H3K4 histone methylase component WDR5A...	0.1	OrthoFinder output from all 47 species
Msp_g14482	No alias	substrate adaptor of CUL4-based E3 ubiquitin ligase...	0.02	OrthoFinder output from all 47 species
Solyc02g086470.3.1	Solyc02g086470	no hits & (original description: none)	0.11	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	None	Extended
MF	GO:0000166	nucleotide binding	ISS	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	None	Extended
BP	GO:0006261	DNA-templated DNA replication	RCA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0031461	cullin-RING ubiquitin ligase complex	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	ISS	Interproscan
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000808	origin recognition complex	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
BP	GO:0006270	DNA replication initiation	IEP	HCCA
BP	GO:0006275	regulation of DNA replication	IEP	HCCA
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0008156	negative regulation of DNA replication	IEP	HCCA
BP	GO:0009566	fertilization	IEP	HCCA
BP	GO:0009567	double fertilization forming a zygote and endosperm	IEP	HCCA
MF	GO:0010385	double-stranded methylated DNA binding	IEP	HCCA
BP	GO:0010564	regulation of cell cycle process	IEP	HCCA
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	HCCA
BP	GO:0010628	positive regulation of gene expression	IEP	HCCA
BP	GO:0010948	negative regulation of cell cycle process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0032875	regulation of DNA endoreduplication	IEP	HCCA
BP	GO:0032876	negative regulation of DNA endoreduplication	IEP	HCCA
BP	GO:0034248	regulation of amide metabolic process	IEP	HCCA
BP	GO:0034250	positive regulation of amide metabolic process	IEP	HCCA
BP	GO:0042023	DNA endoreduplication	IEP	HCCA
BP	GO:0044786	cell cycle DNA replication	IEP	HCCA
BP	GO:0045727	positive regulation of translation	IEP	HCCA
BP	GO:0045786	negative regulation of cell cycle	IEP	HCCA
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0046777	protein autophosphorylation	IEP	HCCA
BP	GO:0051052	regulation of DNA metabolic process	IEP	HCCA
BP	GO:0051053	negative regulation of DNA metabolic process	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051247	positive regulation of protein metabolic process	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
BP	GO:0090329	regulation of DNA-templated DNA replication	IEP	HCCA
BP	GO:2000104	negative regulation of DNA-templated DNA replication	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001680	WD40_repeat	124	156
IPR001680	WD40_repeat	376	410
IPR001680	WD40_repeat	330	365
IPR001680	WD40_repeat	161	199

External Links

No external refs found!

AT3G27640

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation