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  5. AT3G23960

AT3G23960


Description : F-box and associated interaction domains-containing protein


Gene families : OG0001988 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001988_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G23960
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
AT1G19160 No alias F-box family protein 0.01 OrthoFinder output from all 47 species
AT1G30925 No alias phospholipase Cs 0.04 OrthoFinder output from all 47 species
AT1G31163 No alias F-box associated ubiquitination effector family protein 0.03 OrthoFinder output from all 47 species
AT1G31620 No alias unknown protein; Has 9 Blast hits to 9 proteins in 2... 0.05 OrthoFinder output from all 47 species
AT1G32660 No alias F-box and associated interaction domains-containing protein 0.03 OrthoFinder output from all 47 species
AT1G33010 No alias F-box and associated interaction domains-containing protein 0.04 OrthoFinder output from all 47 species
AT1G46840 No alias F-box family protein 0.03 OrthoFinder output from all 47 species
AT1G52495 No alias No description available 0.01 OrthoFinder output from all 47 species
AT1G60370 No alias F-box and associated interaction domains-containing protein 0.04 OrthoFinder output from all 47 species
AT2G21930 No alias F-box associated ubiquitination effector family protein 0.04 OrthoFinder output from all 47 species
AT2G32470 No alias F-box associated ubiquitination effector family protein 0.05 OrthoFinder output from all 47 species
AT3G04660 No alias F-box and associated interaction domains-containing protein 0.04 OrthoFinder output from all 47 species
AT3G47150 No alias F-box and associated interaction domains-containing protein 0.01 OrthoFinder output from all 47 species
AT3G49440 No alias F-box associated ubiquitination effector family protein 0.01 OrthoFinder output from all 47 species
AT3G52330 No alias F-box associated ubiquitination effector family protein 0.03 OrthoFinder output from all 47 species
AT4G38870 No alias F-box and associated interaction domains-containing protein 0.06 OrthoFinder output from all 47 species
AT5G15660 No alias F-box and associated interaction domains-containing protein 0.01 OrthoFinder output from all 47 species
AT5G15670 No alias F-box family protein 0.01 OrthoFinder output from all 47 species
AT5G18160 No alias F-box and associated interaction domains-containing protein 0.05 OrthoFinder output from all 47 species
AT5G44345 No alias F-box associated ubiquitination effector family protein 0.05 OrthoFinder output from all 47 species
AT5G62060 No alias F-box and associated interaction domains-containing protein 0.01 OrthoFinder output from all 47 species
AT5G62660 No alias F-box and associated interaction domains-containing protein 0.03 OrthoFinder output from all 47 species
AT5G65850 No alias F-box and associated interaction domains-containing protein 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000162 tryptophan biosynthetic process IEP HCCA
MF GO:0004640 phosphoribosylanthranilate isomerase activity IEP HCCA
CC GO:0005834 heterotrimeric G-protein complex IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006261 DNA-templated DNA replication IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007276 gamete generation IEP HCCA
BP GO:0009309 amine biosynthetic process IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0010212 response to ionizing radiation IEP HCCA
BP GO:0010492 maintenance of shoot apical meristem identity IEP HCCA
BP GO:0016444 somatic cell DNA recombination IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0032504 multicellular organism reproduction IEP HCCA
BP GO:0032875 regulation of DNA endoreduplication IEP HCCA
BP GO:0032877 positive regulation of DNA endoreduplication IEP HCCA
MF GO:0035197 siRNA binding IEP HCCA
BP GO:0042401 biogenic amine biosynthetic process IEP HCCA
BP GO:0043247 telomere maintenance in response to DNA damage IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
BP GO:0045740 positive regulation of DNA replication IEP HCCA
BP GO:0045787 positive regulation of cell cycle IEP HCCA
BP GO:0046219 indolalkylamine biosynthetic process IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0051054 positive regulation of DNA metabolic process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051302 regulation of cell division IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
MF GO:0061980 regulatory RNA binding IEP HCCA
BP GO:0090068 positive regulation of cell cycle process IEP HCCA
BP GO:0090329 regulation of DNA-templated DNA replication IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:1905360 GTPase complex IEP HCCA
BP GO:2000105 positive regulation of DNA-templated DNA replication IEP HCCA
InterPro domains Description Start Stop
IPR001810 F-box_dom 31 59
IPR013187 F-box-assoc_dom_typ3 236 359
No external refs found!