AT3G23820 (GAE6)

Aliases : GAE6

Description : UDP-D-glucuronate 4-epimerase 6

Gene families : OG0000504 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000504_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G23820

Target	Alias	Description	ECC score	Gene Family Method
Ala_g37564	GAE1	UDP-D-glucuronic acid 4-epimerase & original description: none	0.04	OrthoFinder output from all 47 species
Als_g09457	GAE2	UDP-D-glucuronic acid 4-epimerase & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g02197	GAE1	UDP-D-glucuronic acid 4-epimerase & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g04214	GAE1	UDP-D-glucuronic acid 4-epimerase & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g04335	GAE1	UDP-D-glucuronic acid 4-epimerase & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene44968.t1	GAE1, Aspi01Gene44968	UDP-D-glucuronic acid 4-epimerase & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene66851.t1	GAE1, Aspi01Gene66851	UDP-D-glucuronic acid 4-epimerase & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0157.g053795	GAE1	UDP-D-glucuronic acid 4-epimerase & original...	0.05	OrthoFinder output from all 47 species
Ceric.05G068000.1	GAE1, Ceric.05G068000	UDP-D-glucuronic acid 4-epimerase & original...	0.08	OrthoFinder output from all 47 species
Ceric.25G058200.1	GAE1, Ceric.25G058200	UDP-D-glucuronic acid 4-epimerase & original...	0.04	OrthoFinder output from all 47 species
Ceric.27G040000.1	GAE1, Ceric.27G040000	UDP-D-glucuronic acid 4-epimerase & original...	0.04	OrthoFinder output from all 47 species
Dac_g14249	GAE1	UDP-D-glucuronic acid 4-epimerase & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g33060	GAE1	UDP-D-glucuronic acid 4-epimerase & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g15331	GAE1	UDP-D-glucuronic acid 4-epimerase & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g02206	GAE1	UDP-D-glucuronic acid 4-epimerase & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g12150	GAE1	UDP-D-glucuronic acid 4-epimerase & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g03704	GAE2	UDP-D-glucuronic acid 4-epimerase & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g07756	GAE1	UDP-D-glucuronic acid 4-epimerase & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g10634	GAE2	UDP-D-glucuronic acid 4-epimerase & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g23332	GAE2	UDP-D-glucuronic acid 4-epimerase & original description: none	0.02	OrthoFinder output from all 47 species
Gb_17539	GAE1	UDP-D-glucuronic acid 4-epimerase	0.04	OrthoFinder output from all 47 species
LOC_Os09g32670.1	GAE6, LOC_Os09g32670	UDP-D-glucuronic acid 4-epimerase	0.05	OrthoFinder output from all 47 species
Mp5g05540.1	GAE4	UDP-D-glucuronic acid 4-epimerase	0.05	OrthoFinder output from all 47 species
Ore_g18487	GAE1	UDP-D-glucuronic acid 4-epimerase & original description: none	0.07	OrthoFinder output from all 47 species
Ore_g38572	GAE2	UDP-D-glucuronic acid 4-epimerase & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g38573	GAE1	UDP-D-glucuronic acid 4-epimerase & original description: none	0.08	OrthoFinder output from all 47 species
Pir_g02240	GAE1	UDP-D-glucuronic acid 4-epimerase & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g04502	GAE1	UDP-D-glucuronic acid 4-epimerase & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g61485	GAE1	UDP-D-glucuronic acid 4-epimerase & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001061	GAE1	UDP-D-glucuronic acid 4-epimerase & original...	0.03	OrthoFinder output from all 47 species
Sam_g06740	No alias	UDP-D-glucuronic acid 4-epimerase & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g10577	No alias	UDP-D-glucuronic acid 4-epimerase & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g14395	No alias	UDP-D-glucuronic acid 4-epimerase & original description: none	0.02	OrthoFinder output from all 47 species
Smo89938	GAE3	Carbohydrate metabolism.nucleotide sugar...	0.05	OrthoFinder output from all 47 species
Solyc05g053790.1.1	GAE6, Solyc05g053790	UDP-D-glucuronic acid 4-epimerase	0.04	OrthoFinder output from all 47 species
Solyc09g092330.3.1	GAE6, Solyc09g092330	UDP-D-glucuronic acid 4-epimerase	0.07	OrthoFinder output from all 47 species
Spa_g10357	GAE1	UDP-D-glucuronic acid 4-epimerase & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g18085	GAE1	UDP-D-glucuronic acid 4-epimerase & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e030744_P003	GAE1, Zm00001e030744	UDP-D-glucuronic acid 4-epimerase	0.03	OrthoFinder output from all 47 species
Zm00001e034613_P001	GAE6, Zm00001e034613	UDP-D-glucuronic acid 4-epimerase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005768	endosome	IDA	Interproscan
CC	GO:0005794	Golgi apparatus	IDA	Interproscan
CC	GO:0005794	Golgi apparatus	ISM	Interproscan
CC	GO:0005802	trans-Golgi network	IDA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006568	tryptophan metabolic process	None	Extended
BP	GO:0006569	tryptophan catabolic process	RCA	Interproscan
BP	GO:0006576	biogenic amine metabolic process	None	Extended
BP	GO:0006586	indolalkylamine metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009063	amino acid catabolic process	None	Extended
BP	GO:0009072	aromatic amino acid metabolic process	None	Extended
BP	GO:0009074	aromatic amino acid family catabolic process	None	Extended
BP	GO:0009225	nucleotide-sugar metabolic process	ISS	Interproscan
BP	GO:0009308	amine metabolic process	None	Extended
BP	GO:0009683	indoleacetic acid metabolic process	None	Extended
BP	GO:0009684	indoleacetic acid biosynthetic process	RCA	Interproscan
BP	GO:0009850	auxin metabolic process	None	Extended
BP	GO:0009851	auxin biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010817	regulation of hormone levels	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
BP	GO:0016054	organic acid catabolic process	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016854	racemase and epimerase activity	None	Extended
MF	GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
CC	GO:0031410	cytoplasmic vesicle	None	Extended
CC	GO:0031982	vesicle	None	Extended
CC	GO:0031984	organelle subcompartment	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042430	indole-containing compound metabolic process	None	Extended
BP	GO:0042435	indole-containing compound biosynthetic process	None	Extended
BP	GO:0042436	indole-containing compound catabolic process	None	Extended
BP	GO:0042445	hormone metabolic process	None	Extended
BP	GO:0042446	hormone biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044282	small molecule catabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0046395	carboxylic acid catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
MF	GO:0050378	UDP-glucuronate 4-epimerase activity	ISS	Interproscan
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072330	monocarboxylic acid biosynthetic process	None	Extended
CC	GO:0097708	intracellular vesicle	None	Extended
CC	GO:0098791	Golgi apparatus subcompartment	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901605	alpha-amino acid metabolic process	None	Extended
BP	GO:1901606	alpha-amino acid catabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000038	very long-chain fatty acid metabolic process	IEP	HCCA
BP	GO:0000271	polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0000272	polysaccharide catabolic process	IEP	HCCA
MF	GO:0005102	signaling receptor binding	IEP	HCCA
CC	GO:0005576	extracellular region	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006073	cellular glucan metabolic process	IEP	HCCA
BP	GO:0006090	pyruvate metabolic process	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006096	glycolytic process	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	HCCA
BP	GO:0006629	lipid metabolic process	IEP	HCCA
BP	GO:0006631	fatty acid metabolic process	IEP	HCCA
BP	GO:0006757	ATP generation from ADP	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006833	water transport	IEP	HCCA
BP	GO:0006970	response to osmotic stress	IEP	HCCA
BP	GO:0006972	hyperosmotic response	IEP	HCCA
BP	GO:0007030	Golgi organization	IEP	HCCA
BP	GO:0008361	regulation of cell size	IEP	HCCA
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
CC	GO:0009505	plant-type cell wall	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
BP	GO:0009628	response to abiotic stimulus	IEP	HCCA
BP	GO:0009651	response to salt stress	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
BP	GO:0009742	brassinosteroid mediated signaling pathway	IEP	HCCA
BP	GO:0009743	response to carbohydrate	IEP	HCCA
BP	GO:0009746	response to hexose	IEP	HCCA
BP	GO:0009750	response to fructose	IEP	HCCA
BP	GO:0009825	multidimensional cell growth	IEP	HCCA
BP	GO:0009832	plant-type cell wall biogenesis	IEP	HCCA
BP	GO:0009834	plant-type secondary cell wall biogenesis	IEP	HCCA
CC	GO:0009897	external side of plasma membrane	IEP	HCCA
BP	GO:0009926	auxin polar transport	IEP	HCCA
CC	GO:0009930	longitudinal side of cell surface	IEP	HCCA
BP	GO:0010015	root morphogenesis	IEP	HCCA
BP	GO:0010035	response to inorganic substance	IEP	HCCA
BP	GO:0010038	response to metal ion	IEP	HCCA
BP	GO:0010215	cellulose microfibril organization	IEP	HCCA
BP	GO:0010393	galacturonan metabolic process	IEP	HCCA
BP	GO:0016049	cell growth	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016713	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen	IEP	HCCA
MF	GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	IEP	HCCA
MF	GO:0018685	alkane 1-monooxygenase activity	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
BP	GO:0030198	extracellular matrix organization	IEP	HCCA
BP	GO:0030243	cellulose metabolic process	IEP	HCCA
BP	GO:0030244	cellulose biosynthetic process	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
MF	GO:0030570	pectate lyase activity	IEP	HCCA
MF	GO:0030599	pectinesterase activity	IEP	HCCA
CC	GO:0031225	obsolete anchored component of membrane	IEP	HCCA
BP	GO:0032535	regulation of cellular component size	IEP	HCCA
MF	GO:0033612	receptor serine/threonine kinase binding	IEP	HCCA
BP	GO:0034284	response to monosaccharide	IEP	HCCA
BP	GO:0034406	cell wall beta-glucan metabolic process	IEP	HCCA
BP	GO:0040007	growth	IEP	HCCA
BP	GO:0042044	fluid transport	IEP	HCCA
BP	GO:0042335	cuticle development	IEP	HCCA
BP	GO:0042546	cell wall biogenesis	IEP	HCCA
BP	GO:0042631	cellular response to water deprivation	IEP	HCCA
BP	GO:0042744	hydrogen peroxide catabolic process	IEP	HCCA
BP	GO:0043062	extracellular structure organization	IEP	HCCA
BP	GO:0043401	steroid hormone mediated signaling pathway	IEP	HCCA
BP	GO:0044042	glucan metabolic process	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
BP	GO:0045488	pectin metabolic process	IEP	HCCA
BP	GO:0045489	pectin biosynthetic process	IEP	HCCA
BP	GO:0046031	ADP metabolic process	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
CC	GO:0046658	obsolete anchored component of plasma membrane	IEP	HCCA
BP	GO:0046686	response to cadmium ion	IEP	HCCA
MF	GO:0046910	pectinesterase inhibitor activity	IEP	HCCA
BP	GO:0046939	nucleotide phosphorylation	IEP	HCCA
CC	GO:0048046	apoplast	IEP	HCCA
BP	GO:0048588	developmental cell growth	IEP	HCCA
BP	GO:0048589	developmental growth	IEP	HCCA
BP	GO:0048767	root hair elongation	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051273	beta-glucan metabolic process	IEP	HCCA
BP	GO:0051274	beta-glucan biosynthetic process	IEP	HCCA
BP	GO:0052541	plant-type cell wall cellulose metabolic process	IEP	HCCA
BP	GO:0052546	cell wall pectin metabolic process	IEP	HCCA
BP	GO:0060560	developmental growth involved in morphogenesis	IEP	HCCA
BP	GO:0060918	auxin transport	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
MF	GO:0070696	transmembrane receptor protein serine/threonine kinase binding	IEP	HCCA
BP	GO:0071229	cellular response to acid chemical	IEP	HCCA
BP	GO:0071462	cellular response to water stimulus	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0090066	regulation of anatomical structure size	IEP	HCCA
CC	GO:0098552	side of membrane	IEP	HCCA
BP	GO:1905392	plant organ morphogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR016040	NAD(P)-bd_dom	115	434

External Links

No external refs found!

AT3G23820 (GAE6)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation