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  5. AT3G22490

AT3G22490


Description : Seed maturation protein


Gene families : OG0003000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003000_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G22490

Target Alias Description ECC score Gene Family Method Actions
AT1G03120 RAB28, ATRAB28 responsive to abscisic acid 28 0.03 OrthoFinder output from all 47 species
Aev_g39096 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0008.g011458 No alias not classified & original description: CDS=379-1194 0.07 OrthoFinder output from all 47 species
Ceric.07G017000.1 Ceric.07G017000 not classified & original description: pacid=50628070... 0.05 OrthoFinder output from all 47 species
Ceric.11G015400.1 Ceric.11G015400 not classified & original description: pacid=50596852... 0.05 OrthoFinder output from all 47 species
Ceric.12G023800.1 RAB28, ATRAB28,... not classified & original description: pacid=50600510... 0.06 OrthoFinder output from all 47 species
Ceric.32G026700.1 Ceric.32G026700 not classified & original description: pacid=50598394... 0.04 OrthoFinder output from all 47 species
Dde_g09016 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g17495 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g47990 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01001170001 No alias Late embryogenesis abundant protein D-34 OS=Gossypium hirsutum 0.15 OrthoFinder output from all 47 species
GSVIVT01017985001 No alias Late embryogenesis abundant protein D-34 OS=Gossypium hirsutum 0.21 OrthoFinder output from all 47 species
GSVIVT01021881001 No alias Late embryogenesis abundant protein D-34 OS=Gossypium hirsutum 0.22 OrthoFinder output from all 47 species
Gb_18212 No alias Late embryogenesis abundant protein D-34 OS=Gossypium... 0.03 OrthoFinder output from all 47 species
LOC_Os03g06360.1 LOC_Os03g06360 Late embryogenesis abundant protein D-34 OS=Gossypium... 0.17 OrthoFinder output from all 47 species
LOC_Os03g53610.1 LOC_Os03g53610 Late embryogenesis abundant protein D-34 OS=Gossypium... 0.12 OrthoFinder output from all 47 species
LOC_Os03g53620.1 ATECP31, LOC_Os03g53620 no hits & (original description: none) 0.18 OrthoFinder output from all 47 species
LOC_Os06g23350.1 LOC_Os06g23350 Late embryogenesis abundant protein D-34 OS=Gossypium... 0.16 OrthoFinder output from all 47 species
LOC_Os10g29570.1 RAB28, ATRAB28,... no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
Len_g28025 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g40603 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_14118g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_216273g0010 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
MA_326206g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_49897g0020 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Mp5g18240.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Mp7g06630.1 No alias Late embryogenesis abundant protein 31 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Ore_g14470 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g41870 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c6_200V3.1 Pp3c6_200 Seed maturation protein 0.02 OrthoFinder output from all 47 species
Ppi_g09444 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g55933 RAB28, ATRAB28 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g56546 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo84789 No alias Late embryogenesis abundant protein 31 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc09g065360.4.1 Solyc09g065360 Late embryogenesis abundant protein 31 OS=Arabidopsis... 0.18 OrthoFinder output from all 47 species
Solyc09g082100.3.1 Solyc09g082100 Late embryogenesis abundant protein 31 OS=Arabidopsis... 0.2 OrthoFinder output from all 47 species
Solyc09g082110.4.1 Solyc09g082110 Late embryogenesis abundant protein D-34 OS=Gossypium... 0.17 OrthoFinder output from all 47 species
Spa_g11729 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g26688 RAB28, ATRAB28 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e000449_P001 Zm00001e000449 Late embryogenesis abundant protein D-34 OS=Gossypium... 0.14 OrthoFinder output from all 47 species
Zm00001e005665_P002 Zm00001e005665 Late embryogenesis abundant protein D-34 OS=Gossypium... 0.14 OrthoFinder output from all 47 species
Zm00001e005666_P001 Zm00001e005666 no hits & (original description: none) 0.14 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0009793 embryo development ending in seed dormancy ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0004033 aldo-keto reductase (NADP) activity IEP HCCA
MF GO:0004129 cytochrome-c oxidase activity IEP HCCA
MF GO:0004462 lactoylglutathione lyase activity IEP HCCA
MF GO:0004784 superoxide dismutase activity IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006721 terpenoid metabolic process IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
BP GO:0006829 zinc ion transport IEP HCCA
MF GO:0008106 alcohol dehydrogenase (NADP+) activity IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009838 abscission IEP HCCA
BP GO:0009845 seed germination IEP HCCA
BP GO:0010227 floral organ abscission IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
BP GO:0016114 terpenoid biosynthetic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP HCCA
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
MF GO:0016846 carbon-sulfur lyase activity IEP HCCA
BP GO:0019430 removal of superoxide radicals IEP HCCA
BP GO:0019915 lipid storage IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
MF GO:0045735 nutrient reservoir activity IEP HCCA
BP GO:0048700 acquisition of desiccation tolerance in seed IEP HCCA
BP GO:0050826 response to freezing IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
BP GO:0097439 acquisition of desiccation tolerance IEP HCCA
BP GO:0098869 cellular oxidant detoxification IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1990748 cellular detoxification IEP HCCA
InterPro domains Description Start Stop
IPR007011 LEA_SMP_dom 136 192
IPR007011 LEA_SMP_dom 14 68
IPR007011 LEA_SMP_dom 201 260
No external refs found!