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  5. AT3G20440

AT3G20440 (EMB2729, BE1)


Aliases : EMB2729, BE1

Description : Alpha amylase family protein


Gene families : OG0001102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001102_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G20440
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00224220 EMB2729, BE1,... Carbohydrate metabolism.starch... 0.08 OrthoFinder output from all 47 species
Adi_g022934 EMB2729, BE1 EC_2.4 glycosyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g07372 SBE2.2 EC_2.4 glycosyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05750 EMB2729, BE1 EC_2.4 glycosyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g18095 EMB2729, BE1 EC_2.4 glycosyltransferase & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.09G001300.1 EMB2729, BE1,... EC_2.4 glycosyltransferase & original description:... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000981.14 SBE2.2 Carbohydrate metabolism.starch... 0.02 OrthoFinder output from all 47 species
Dac_g23856 EMB2729, BE1 EC_2.4 glycosyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g04438 EMB2729, BE1 EC_2.4 glycosyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g19998 EMB2729, BE1 EC_2.4 glycosyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01037695001 EMB2729, BE1 Carbohydrate metabolism.starch... 0.1 OrthoFinder output from all 47 species
Gb_38481 EMB2729, BE1 starch branching enzyme 0.04 OrthoFinder output from all 47 species
LOC_Os06g26234.1 EMB2729, BE1,... starch branching enzyme 0.03 OrthoFinder output from all 47 species
Len_g13716 EMB2729, BE1 EC_2.4 glycosyltransferase & original description: none 0.05 OrthoFinder output from all 47 species
MA_10435727g0010 EMB2729, BE1 1,4-alpha-glucan-branching enzyme 3,... 0.03 OrthoFinder output from all 47 species
Mp3g21170.1 EMB2729, BE1 starch branching enzyme 0.02 OrthoFinder output from all 47 species
Msp_g25017 SBE2.2 EC_2.4 glycosyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g10952 EMB2729, BE1 EC_2.4 glycosyltransferase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g44500 EMB2729, BE1 EC_2.4 glycosyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03209 SBE2.2 EC_2.4 glycosyltransferase & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0131.g022118 SBE2.2 EC_2.4 glycosyltransferase & original description: CDS=185-2821 0.04 OrthoFinder output from all 47 species
Sam_g10572 No alias EC_2.4 glycosyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16543 No alias EC_2.4 glycosyltransferase & original description: none 0.03 OrthoFinder output from all 47 species
Solyc07g064830.3.1 EMB2729, BE1,... starch branching enzyme 0.12 OrthoFinder output from all 47 species
Zm00001e027838_P001 EMB2729, BE1,... starch branching enzyme 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004556 alpha-amylase activity ISS Interproscan
BP GO:0005975 carbohydrate metabolic process IMP Interproscan
BP GO:0005975 carbohydrate metabolic process ISS Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
CC GO:0009536 plastid IDA Interproscan
BP GO:0009791 post-embryonic development IMP Interproscan
BP GO:0009793 embryo development ending in seed dormancy NAS Interproscan
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
CC GO:0005694 chromosome IEP HCCA
CC GO:0005744 TIM23 mitochondrial import inner membrane translocase complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006220 pyrimidine nucleotide metabolic process IEP HCCA
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006268 DNA unwinding involved in DNA replication IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008320 protein transmembrane transporter activity IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP HCCA
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009295 nucleoid IEP HCCA
CC GO:0009508 plastid chromosome IEP HCCA
CC GO:0009532 plastid stroma IEP HCCA
CC GO:0009570 chloroplast stroma IEP HCCA
BP GO:0009657 plastid organization IEP HCCA
BP GO:0009658 chloroplast organization IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010020 chloroplast fission IEP HCCA
MF GO:0015450 protein-transporting ATPase activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
MF GO:0022884 macromolecule transmembrane transporter activity IEP HCCA
BP GO:0031425 chloroplast RNA processing IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
CC GO:0042644 chloroplast nucleoid IEP HCCA
CC GO:0042646 plastid nucleoid IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043572 plastid fission IEP HCCA
MF GO:0043621 protein self-association IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0140318 protein transporter activity IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006047 Glyco_hydro_13_cat_dom 424 468
IPR006048 A-amylase/branching_C 771 863
No external refs found!