AT3G18930

Description : RING/U-box superfamily protein

Gene families : OG0000008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G18930

Target	Alias	Description	ECC score	Gene Family Method
AT4G11360	RHA1B	RING-H2 finger A1B	0.06	OrthoFinder output from all 47 species
Adi_g002393	ATL5	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.06	OrthoFinder output from all 47 species
Adi_g044123	ATL2, TL2	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.02	OrthoFinder output from all 47 species
Aev_g01255	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.02	OrthoFinder output from all 47 species
Aev_g03117	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.04	OrthoFinder output from all 47 species
Aev_g03271	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.07	OrthoFinder output from all 47 species
Aev_g15196	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.01	OrthoFinder output from all 47 species
Als_g03039	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.03	OrthoFinder output from all 47 species
Aob_g29275	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.03	OrthoFinder output from all 47 species
Aop_g11831	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g12044	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g26548	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.02	OrthoFinder output from all 47 species
Aop_g70676	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene42978.t2	Aspi01Gene42978	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.02	OrthoFinder output from all 47 species
Azfi_s0229.g059103	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.03	OrthoFinder output from all 47 species
Cba_g34751	BRH1	E3 ubiquitin ligase *(BRH) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.03G012300.1	BRH1, Ceric.03G012300	not classified & original description: pacid=50572071...	0.03	OrthoFinder output from all 47 species
Ceric.22G020900.1	ATL43, Ceric.22G020900	not classified & original description: pacid=50614198...	0.05	OrthoFinder output from all 47 species
Dac_g02003	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.04	OrthoFinder output from all 47 species
Dac_g04583	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.07	OrthoFinder output from all 47 species
Dde_g40178	ATL2, TL2	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.04	OrthoFinder output from all 47 species
Ehy_g03551	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.03	OrthoFinder output from all 47 species
Ehy_g16355	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os01g64620.1	LOC_Os01g64620	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
LOC_Os02g36330.1	LOC_Os02g36330	RING-H2-class E3 ligase	0.02	OrthoFinder output from all 47 species
LOC_Os12g01750.1	LOC_Os12g01750	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
LOC_Os12g02350.1	LOC_Os12g02350	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Len_g20513	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.05	OrthoFinder output from all 47 species
Lfl_g04047	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.05	OrthoFinder output from all 47 species
MA_15246g0010	BRH1	RING-H2-class E3 ligase	0.04	OrthoFinder output from all 47 species
MA_754688g0010	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Mp4g04600.1	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Msp_g18716	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g31921	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Nbi_g03518	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.04	OrthoFinder output from all 47 species
Nbi_g14314	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.03	OrthoFinder output from all 47 species
Nbi_g26349	ATL3	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g10560	BRH1	E3 ubiquitin ligase *(BRH) & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g01265	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.05	OrthoFinder output from all 47 species
Ppi_g10849	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.03	OrthoFinder output from all 47 species
Ppi_g13428	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0074.g017298	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0081.g018006	XERICO	not classified & original description: CDS=1-537	0.03	OrthoFinder output from all 47 species
Sam_g03685	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g07697	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.02	OrthoFinder output from all 47 species
Sam_g25475	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g52337	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Solyc04g074820.3.1	Solyc04g074820	RING-H2-class E3 ligase	0.04	OrthoFinder output from all 47 species
Solyc08g081370.1.1	BRH1, Solyc08g081370	E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis...	0.1	OrthoFinder output from all 47 species
Solyc12g094385.1.1	Solyc12g094385	E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Spa_g29239	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.02	OrthoFinder output from all 47 species
Spa_g48427	No alias	RING-H2-class ATL-subclass E3 ubiquitin ligase &...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009692	ethylene metabolic process	None	Extended
BP	GO:0009693	ethylene biosynthetic process	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043449	cellular alkene metabolic process	None	Extended
BP	GO:0043450	alkene biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0120251	hydrocarbon biosynthetic process	None	Extended
BP	GO:0120252	hydrocarbon metabolic process	None	Extended
BP	GO:0120254	olefinic compound metabolic process	None	Extended
BP	GO:0120255	olefinic compound biosynthetic process	None	Extended
BP	GO:1900673	olefin metabolic process	None	Extended
BP	GO:1900674	olefin biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001841	Znf_RING	155	198

External Links

No external refs found!

AT3G18930

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation