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  5. AT3G18900

AT3G18900


Description : unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT5G66600.3); Has 1466 Blast hits to 1426 proteins in 93 species: Archae - 0; Bacteria - 91; Metazoa - 23; Fungi - 0; Plants - 1310; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink).


Gene families : OG0000236 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000236_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G18900

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00100500 evm_27.TU.AmTr_v1... No description available 0.05 OrthoFinder output from all 47 species
AT1G16750 No alias Protein of unknown function, DUF547 0.03 OrthoFinder output from all 47 species
AT2G39690 No alias Protein of unknown function, DUF547 0.03 OrthoFinder output from all 47 species
AT4G37080 No alias Protein of unknown function, DUF547 0.05 OrthoFinder output from all 47 species
Als_g13551 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g21128 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g11890 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g19804 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene62766.t1 Aspi01Gene62766 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene66708.t1 Aspi01Gene66708 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g03959 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g13842 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g14778 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g23842 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g38820 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g08174 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g37118 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g50801 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01002886001 No alias No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01031903001 No alias No description available 0.04 OrthoFinder output from all 47 species
Gb_10011 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os01g05480.3 LOC_Os01g05480 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os08g40420.1 LOC_Os08g40420 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os09g28850.1 LOC_Os09g28850 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Len_g59225 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g15458 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g21403 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g07704 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13997 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g05228 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo79158 No alias No description available 0.05 OrthoFinder output from all 47 species
Solyc01g109270.3.1 Solyc01g109270 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Solyc06g008560.2.1 Solyc06g008560 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Solyc10g051030.2.1 Solyc10g051030 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Solyc11g069840.3.1 Solyc11g069840 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Spa_g13793 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g14701 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g49986 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g29415 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e002322_P002 Zm00001e002322 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e009970_P005 Zm00001e009970 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e034388_P001 Zm00001e034388 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0004707 MAP kinase activity IEP HCCA
BP GO:0006949 syncytium formation IEP HCCA
BP GO:0009827 plant-type cell wall modification IEP HCCA
BP GO:0009828 plant-type cell wall loosening IEP HCCA
BP GO:0010583 response to cyclopentenone IEP HCCA
InterPro domains Description Start Stop
IPR006869 DUF547 321 450
IPR025757 MIP1_Leuzipper 80 136
No external refs found!