AT3G18740

Description : Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein

Gene families : OG0000968 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000968_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G18740
Cluster	HCCA: Cluster_4

Target	Alias	Description	ECC score	Gene Family Method
Adi_g019990	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Adi_g051341	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Adi_g104467	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Adi_g128679	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ala_g12139	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ala_g33421	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.22	OrthoFinder output from all 47 species
Als_g19318	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aob_g03904	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Aob_g13899	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aop_g17201	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.15	OrthoFinder output from all 47 species
Aop_g23120	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Aop_g69765	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.2	OrthoFinder output from all 47 species
Aspi01Gene70271.t1	Aspi01Gene70271	component *(eL30) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0032.g024709	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0043.g026966	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Cba_g07807	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ceric.21G027700.1	Ceric.21G027700	component *(eL30) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Ceric.31G042300.1	Ceric.31G042300	component *(eL30) of large ribosomal-subunit (LSU)...	0.16	OrthoFinder output from all 47 species
Ceric.36G058900.1	Ceric.36G058900	component *(eL30) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001164.6	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.14	OrthoFinder output from all 47 species
Cre10.g420750	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.34	OrthoFinder output from all 47 species
Dac_g42615	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Dcu_g06686	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.21	OrthoFinder output from all 47 species
Dde_g34188	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Dde_g45559	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ehy_g19759	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ehy_g26814	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
GSVIVT01022191001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.32	OrthoFinder output from all 47 species
GSVIVT01032102001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.16	OrthoFinder output from all 47 species
Gb_02409	No alias	component RPL30 of LSU proteome component	0.26	OrthoFinder output from all 47 species
Gb_13527	No alias	component RPL30 of LSU proteome component	0.07	OrthoFinder output from all 47 species
LOC_Os01g16890.1	LOC_Os01g16890	component RPL30 of LSU proteome component	0.31	OrthoFinder output from all 47 species
LOC_Os01g59730.1	LOC_Os01g59730	component RPL30 of LSU proteome component	0.07	OrthoFinder output from all 47 species
LOC_Os05g41110.1	LOC_Os05g41110	component RPL30 of LSU proteome component	0.12	OrthoFinder output from all 47 species
Len_g15495	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Len_g41479	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Len_g54169	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g14157	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Lfl_g21475	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g32270	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
MA_6354g0010	No alias	component RPL30 of LSU proteome component	0.21	OrthoFinder output from all 47 species
Mp7g01690.1	No alias	component RPL30 of LSU proteome component	0.3	OrthoFinder output from all 47 species
Msp_g39132	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Msp_g41110	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Ore_g36755	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Pir_g08549	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pp3c12_9290V3.1	Pp3c12_9290	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	0.13	OrthoFinder output from all 47 species
Pp3c16_10400V3.1	Pp3c16_10400	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	0.17	OrthoFinder output from all 47 species
Pp3c25_9320V3.1	Pp3c25_9320	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	0.1	OrthoFinder output from all 47 species
Pp3c4_15480V3.1	Pp3c4_15480	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	0.21	OrthoFinder output from all 47 species
Ppi_g07992	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ppi_g12058	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g33788	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ppi_g45700	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ppi_g50584	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ppi_g52532	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0023.g008793	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g00684	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Sam_g11493	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Sam_g11494	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Sam_g20179	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Sam_g41445	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g41910	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g42031	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Smo19071	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.24	OrthoFinder output from all 47 species
Solyc01g009100.4.1	Solyc01g009100	component RPL30 of LSU proteome component	0.29	OrthoFinder output from all 47 species
Solyc04g072660.4.1	Solyc04g072660	component RPL30 of LSU proteome component	0.19	OrthoFinder output from all 47 species
Solyc11g071490.2.1	Solyc11g071490	component RPL30 of LSU proteome component	0.16	OrthoFinder output from all 47 species
Spa_g00831	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Tin_g05827	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.17	OrthoFinder output from all 47 species
Tin_g38155	No alias	component *(eL30) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Zm00001e013242_P001	Zm00001e013242	component RPL30 of LSU proteome component	0.01	OrthoFinder output from all 47 species
Zm00001e025492_P001	Zm00001e025492	component RPL30 of LSU proteome component	0.08	OrthoFinder output from all 47 species
Zm00001e031987_P001	Zm00001e031987	component RPL30 of LSU proteome component	0.13	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005840	ribosome	None	Extended
CC	GO:0005886	plasma membrane	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009620	response to fungus	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015934	large ribosomal subunit	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0022625	cytosolic large ribosomal subunit	IDA	Interproscan
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0030054	cell junction	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000028	ribosomal small subunit assembly	IEP	HCCA
MF	GO:0000036	acyl carrier activity	IEP	HCCA
BP	GO:0000469	cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0001510	RNA methylation	IEP	HCCA
MF	GO:0004550	nucleoside diphosphate kinase activity	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005732	sno(s)RNA-containing ribonucleoprotein complex	IEP	HCCA
CC	GO:0005759	mitochondrial matrix	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005829	cytosol	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009409	response to cold	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0009790	embryo development	IEP	HCCA
BP	GO:0009793	embryo development ending in seed dormancy	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016776	phosphotransferase activity, phosphate group as acceptor	IEP	HCCA
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0034644	cellular response to UV	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042335	cuticle development	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
MF	GO:0044620	ACP phosphopantetheine attachment site binding	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
MF	GO:0050897	cobalt ion binding	IEP	HCCA
MF	GO:0051192	prosthetic group binding	IEP	HCCA
BP	GO:0071493	cellular response to UV-B	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
MF	GO:0140104	molecular carrier activity	IEP	HCCA
MF	GO:0140414	phosphopantetheine-dependent carrier activity	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004038	Ribosomal_L7Ae/L30e/S12e/Gad45	14	105

External Links

No external refs found!

AT3G18740

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation