AT3G18140

Description : Transducin/WD40 repeat-like superfamily protein

Gene families : OG0005737 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005737_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G18140

Target	Alias	Description	ECC score	Gene Family Method
Aop_g01651	No alias	regulatory component *(LST8) of TORC complex & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0909.g092270	No alias	regulatory component *(LST8) of TORC complex & original...	0.04	OrthoFinder output from all 47 species
Cba_g15311	No alias	regulatory component *(LST8) of TORC complex & original...	0.02	OrthoFinder output from all 47 species
Gb_38899	No alias	regulatory component LST8 of TORC complex	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	None	Extended
MF	GO:0000166	nucleotide binding	ISS	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005768	endosome	IDA	Interproscan
BP	GO:0006109	regulation of carbohydrate metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009648	photoperiodism	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010675	regulation of cellular carbohydrate metabolic process	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0031410	cytoplasmic vesicle	None	Extended
CC	GO:0031461	cullin-RING ubiquitin ligase complex	None	Extended
CC	GO:0031982	vesicle	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043255	regulation of carbohydrate biosynthetic process	None	Extended
BP	GO:0048571	long-day photoperiodism	IMP	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0062012	regulation of small molecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	ISS	Interproscan
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080091	regulation of raffinose metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0097708	intracellular vesicle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1900088	regulation of inositol biosynthetic process	IMP	Interproscan
BP	GO:1900091	regulation of raffinose biosynthetic process	IMP	Interproscan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
BP	GO:1902930	regulation of alcohol biosynthetic process	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0010219	regulation of vernalization response	IEP	HCCA
BP	GO:0010220	positive regulation of vernalization response	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0048584	positive regulation of response to stimulus	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001680	WD40_repeat	35	62
IPR001680	WD40_repeat	245	281
IPR001680	WD40_repeat	69	106
IPR001680	WD40_repeat	202	239
IPR001680	WD40_repeat	121	147

External Links

No external refs found!

AT3G18140

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation