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  5. AT3G17900

AT3G17900


Description : unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 45 Blast hits to 44 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 39; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).


Gene families : OG0006244 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006244_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G17900
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
Aob_g18201 No alias plant-specific component *(TRIPP) of TRAPP-II Golgi... 0.02 OrthoFinder output from all 47 species
Aspi01Gene65949.t1 Aspi01Gene65949 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g27477 No alias plant-specific component *(TRIPP) of TRAPP-II Golgi... 0.02 OrthoFinder output from all 47 species
Ceric.39G030300.1 Ceric.39G030300 plant-specific component *(TRIPP) of TRAPP-II Golgi... 0.08 OrthoFinder output from all 47 species
Dac_g01023 No alias plant-specific component *(TRIPP) of TRAPP-II Golgi... 0.02 OrthoFinder output from all 47 species
GSVIVT01020074001 No alias No description available 0.05 OrthoFinder output from all 47 species
GSVIVT01036940001 No alias No description available 0.05 OrthoFinder output from all 47 species
LOC_Os03g05812.1 LOC_Os03g05812 no hits & (original description: none) 0.14 OrthoFinder output from all 47 species
Len_g30924 No alias plant-specific component *(TRIPP) of TRAPP-II Golgi... 0.06 OrthoFinder output from all 47 species
Lfl_g40725 No alias plant-specific component *(TRIPP) of TRAPP-II Golgi... 0.11 OrthoFinder output from all 47 species
Mp3g24570.1 No alias no hits & (original description: none) 0.11 OrthoFinder output from all 47 species
Msp_g09162 No alias plant-specific component *(TRIPP) of TRAPP-II Golgi... 0.08 OrthoFinder output from all 47 species
Ppi_g52295 No alias plant-specific component *(TRIPP) of TRAPP-II Golgi... 0.03 OrthoFinder output from all 47 species
Solyc05g007030.4.1 Solyc05g007030 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
Spa_g07157 No alias plant-specific component *(TRIPP) of TRAPP-II Golgi... 0.02 OrthoFinder output from all 47 species
Zm00001e006537_P003 Zm00001e006537 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Zm00001e039644_P001 Zm00001e039644 no hits & (original description: none) 0.16 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
BP GO:0008150 biological_process ND Interproscan
CC GO:0009507 chloroplast ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005794 Golgi apparatus IEP HCCA
CC GO:0005795 Golgi stack IEP HCCA
CC GO:0005829 cytosol IEP HCCA
CC GO:0005874 microtubule IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0006007 glucose catabolic process IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006409 tRNA export from nucleus IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006897 endocytosis IEP HCCA
BP GO:0007155 cell adhesion IEP HCCA
CC GO:0009504 cell plate IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
CC GO:0009524 phragmoplast IEP HCCA
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP HCCA
BP GO:0010638 positive regulation of organelle organization IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016926 protein desumoylation IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0019320 hexose catabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0030029 actin filament-based process IEP HCCA
BP GO:0030048 actin filament-based movement IEP HCCA
CC GO:0030054 cell junction IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
MF GO:0030276 clathrin binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0042743 hydrogen peroxide metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0045595 regulation of cell differentiation IEP HCCA
BP GO:0046365 monosaccharide catabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0050665 hydrogen peroxide biosynthetic process IEP HCCA
BP GO:0051031 tRNA transport IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0051645 Golgi localization IEP HCCA
BP GO:0051646 mitochondrion localization IEP HCCA
BP GO:0060151 peroxisome localization IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
BP GO:0097064 ncRNA export from nucleus IEP HCCA
CC GO:0099080 supramolecular complex IEP HCCA
CC GO:0099081 supramolecular polymer IEP HCCA
CC GO:0099512 supramolecular fiber IEP HCCA
CC GO:0099513 polymeric cytoskeletal fiber IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1903409 reactive oxygen species biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!