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  5. AT3G17440

AT3G17440 (NPSN13, ATNPSN13)


Aliases : NPSN13, ATNPSN13

Description : novel plant snare 13


Gene families : OG0002530 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002530_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G17440

Target Alias Description ECC score Gene Family Method Actions
Aev_g24174 NPSN13, ATNPSN13 Qb-type NPSN-group component of SNARE membrane fusion... 0.02 OrthoFinder output from all 47 species
Cre07.g342050 NSPN11, ATNPSN11, NPSN11 Vesicle trafficking.SNARE target membrane recognition... 0.04 OrthoFinder output from all 47 species
GSVIVT01017683001 NPSN13, ATNPSN13 Vesicle trafficking.SNARE target membrane recognition... 0.03 OrthoFinder output from all 47 species
Zm00001e035664_P001 NPSN13,... NPSN group Qb-type SNARE protein 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005886 plasma membrane IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
BP GO:0016192 vesicle-mediated transport RCA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000156 phosphorelay response regulator activity IEP HCCA
CC GO:0000325 plant-type vacuole IEP HCCA
CC GO:0000815 ESCRT III complex IEP HCCA
CC GO:0005770 late endosome IEP HCCA
CC GO:0005774 vacuolar membrane IEP HCCA
CC GO:0005798 Golgi-associated vesicle IEP HCCA
BP GO:0006892 post-Golgi vesicle-mediated transport IEP HCCA
BP GO:0006896 Golgi to vacuole transport IEP HCCA
BP GO:0007020 microtubule nucleation IEP HCCA
BP GO:0007033 vacuole organization IEP HCCA
MF GO:0008565 obsolete protein transporter activity IEP HCCA
BP GO:0009736 cytokinin-activated signaling pathway IEP HCCA
BP GO:0009739 response to gibberellin IEP HCCA
BP GO:0009908 flower development IEP HCCA
BP GO:0010082 regulation of root meristem growth IEP HCCA
BP GO:0010380 regulation of chlorophyll biosynthetic process IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
CC GO:0030133 transport vesicle IEP HCCA
CC GO:0030135 coated vesicle IEP HCCA
CC GO:0030136 clathrin-coated vesicle IEP HCCA
CC GO:0030140 trans-Golgi network transport vesicle IEP HCCA
BP GO:0031537 regulation of anthocyanin metabolic process IEP HCCA
BP GO:0032870 cellular response to hormone stimulus IEP HCCA
CC GO:0036452 ESCRT complex IEP HCCA
BP GO:0048367 shoot system development IEP HCCA
BP GO:0048731 system development IEP HCCA
MF GO:0060089 molecular transducer activity IEP HCCA
BP GO:0071310 cellular response to organic substance IEP HCCA
BP GO:0071368 cellular response to cytokinin stimulus IEP HCCA
BP GO:0071495 cellular response to endogenous stimulus IEP HCCA
BP GO:0080022 primary root development IEP HCCA
BP GO:0080113 regulation of seed growth IEP HCCA
BP GO:0090056 regulation of chlorophyll metabolic process IEP HCCA
BP GO:0090567 reproductive shoot system development IEP HCCA
BP GO:1901401 regulation of tetrapyrrole metabolic process IEP HCCA
BP GO:1901463 regulation of tetrapyrrole biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!