AT3G16380 (PAB6)

Aliases : PAB6

Description : poly(A) binding protein 6

Gene families : OG0000326 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000326_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G16380
Cluster	HCCA: Cluster_143

Target	Alias	Description	ECC score	Gene Family Method
Adi_g025026	PAB2, PABP2, ATPAB2	mRNA poly-A-tail binding factor *(PABP) & original...	0.02	OrthoFinder output from all 47 species
Adi_g087392	PAB2, PABP2, ATPAB2	mRNA poly-A-tail binding factor *(PABP) & original...	0.02	OrthoFinder output from all 47 species
Adi_g087393	PAB2, PABP2, ATPAB2	mRNA poly-A-tail binding factor *(PABP) & original...	0.02	OrthoFinder output from all 47 species
Adi_g112649	PAB2, PABP2, ATPAB2	mRNA poly-A-tail binding factor *(PABP) & original...	0.02	OrthoFinder output from all 47 species
Cba_g27225	PAB8, PABP8	mRNA poly-A-tail binding factor *(PABP) & original...	0.02	OrthoFinder output from all 47 species
Dde_g51529	PAB2, PABP2, ATPAB2	mRNA poly-A-tail binding factor *(PABP) & original...	0.02	OrthoFinder output from all 47 species
MA_36585g0010	PAB2, PABP2, ATPAB2	mRNA poly-A-tail binding factor (PABP)	0.01	OrthoFinder output from all 47 species
Solyc04g072043.1.1	PAB5, Solyc04g072043	mRNA poly-A-tail binding factor (PABP)	0.04	OrthoFinder output from all 47 species
Solyc10g085750.2.1	PAB7, Solyc10g085750	mRNA poly-A-tail binding factor (PABP)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISS	Interproscan
MF	GO:0003743	translation initiation factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006413	translational initiation	TAS	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	TAS	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004866	endopeptidase inhibitor activity	IEP	HCCA
MF	GO:0004867	serine-type endopeptidase inhibitor activity	IEP	HCCA
MF	GO:0005372	water transmembrane transporter activity	IEP	HCCA
BP	GO:0006935	chemotaxis	IEP	HCCA
MF	GO:0008474	palmitoyl-(protein) hydrolase activity	IEP	HCCA
BP	GO:0009566	fertilization	IEP	HCCA
BP	GO:0009567	double fertilization forming a zygote and endosperm	IEP	HCCA
BP	GO:0010183	pollen tube guidance	IEP	HCCA
BP	GO:0010466	negative regulation of peptidase activity	IEP	HCCA
BP	GO:0010951	negative regulation of endopeptidase activity	IEP	HCCA
MF	GO:0015204	urea transmembrane transporter activity	IEP	HCCA
MF	GO:0015250	water channel activity	IEP	HCCA
BP	GO:0015840	urea transport	IEP	HCCA
MF	GO:0016790	thiolester hydrolase activity	IEP	HCCA
BP	GO:0019755	one-carbon compound transport	IEP	HCCA
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
BP	GO:0030154	cell differentiation	IEP	HCCA
BP	GO:0030162	regulation of proteolysis	IEP	HCCA
MF	GO:0030414	peptidase inhibitor activity	IEP	HCCA
BP	GO:0040011	locomotion	IEP	HCCA
BP	GO:0042330	taxis	IEP	HCCA
MF	GO:0042887	amide transmembrane transporter activity	IEP	HCCA
CC	GO:0042995	cell projection	IEP	HCCA
BP	GO:0043086	negative regulation of catalytic activity	IEP	HCCA
BP	GO:0044092	negative regulation of molecular function	IEP	HCCA
BP	GO:0045861	negative regulation of proteolysis	IEP	HCCA
BP	GO:0048235	pollen sperm cell differentiation	IEP	HCCA
CC	GO:0048555	generative cell nucleus	IEP	HCCA
BP	GO:0048869	cellular developmental process	IEP	HCCA
BP	GO:0050918	positive chemotaxis	IEP	HCCA
BP	GO:0051336	regulation of hydrolase activity	IEP	HCCA
BP	GO:0051346	negative regulation of hydrolase activity	IEP	HCCA
BP	GO:0052547	regulation of peptidase activity	IEP	HCCA
BP	GO:0052548	regulation of endopeptidase activity	IEP	HCCA
MF	GO:0061134	peptidase regulator activity	IEP	HCCA
MF	GO:0061135	endopeptidase regulator activity	IEP	HCCA
CC	GO:0090406	pollen tube	IEP	HCCA
MF	GO:0098599	palmitoyl hydrolase activity	IEP	HCCA
CC	GO:0120025	plasma membrane bounded cell projection	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	23	92
IPR000504	RRM_dom	114	181
IPR000504	RRM_dom	204	272
IPR000504	RRM_dom	306	374

External Links

No external refs found!

AT3G16380 (PAB6)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation