AT3G15980

Description : Coatomer, beta' subunit

Gene families : OG0002111 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002111_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G15980

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00142p00013680	evm_27.TU.AmTr_v1...	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.05	OrthoFinder output from all 47 species
Adi_g015312	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g07650	No alias	subunit beta2 of coat protein complex & original...	0.03	OrthoFinder output from all 47 species
Aev_g13025	No alias	subunit beta2 of coat protein complex & original...	0.08	OrthoFinder output from all 47 species
Ala_g02602	No alias	subunit beta2 of coat protein complex & original...	0.14	OrthoFinder output from all 47 species
Als_g23306	No alias	subunit beta2 of coat protein complex & original...	0.07	OrthoFinder output from all 47 species
Aop_g12571	No alias	subunit beta2 of coat protein complex & original...	0.07	OrthoFinder output from all 47 species
Azfi_s0001.g000608	No alias	subunit beta2 of coat protein complex & original...	0.07	OrthoFinder output from all 47 species
Cba_g14578	No alias	subunit beta2 of coat protein complex & original...	0.03	OrthoFinder output from all 47 species
Cba_g32368	No alias	subunit beta2 of coat protein complex & original...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020903.33	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.04	OrthoFinder output from all 47 species
Cre02.g118500	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.09	OrthoFinder output from all 47 species
Dac_g05778	No alias	subunit beta2 of coat protein complex & original...	0.04	OrthoFinder output from all 47 species
Dcu_g04083	No alias	subunit beta2 of coat protein complex & original...	0.12	OrthoFinder output from all 47 species
Dde_g02366	No alias	subunit beta2 of coat protein complex & original...	0.02	OrthoFinder output from all 47 species
GSVIVT01017121001	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.06	OrthoFinder output from all 47 species
Gb_26317	No alias	subunit beta2 of coat protein complex	0.05	OrthoFinder output from all 47 species
LOC_Os02g11830.2	LOC_Os02g11830	subunit beta2 of coat protein complex	0.06	OrthoFinder output from all 47 species
LOC_Os02g11840.1	LOC_Os02g11840	subunit beta2 of coat protein complex	0.14	OrthoFinder output from all 47 species
LOC_Os06g05180.3	LOC_Os06g05180	Coatomer subunit beta-1 OS=Oryza sativa subsp. japonica...	0.08	OrthoFinder output from all 47 species
Len_g12265	No alias	subunit beta2 of coat protein complex & original...	0.03	OrthoFinder output from all 47 species
Len_g12266	No alias	subunit beta2 of coat protein complex & original...	0.07	OrthoFinder output from all 47 species
Len_g46090	No alias	subunit beta2 of coat protein complex & original...	0.05	OrthoFinder output from all 47 species
Len_g57302	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g05710	No alias	subunit beta2 of coat protein complex & original...	0.07	OrthoFinder output from all 47 species
MA_10436677g0010	No alias	Coatomer subunit beta-3 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
MA_10436836g0020	No alias	Coatomer subunit beta-1 OS=Oryza sativa subsp. japonica...	0.02	OrthoFinder output from all 47 species
MA_10436968g0010	No alias	peroxisomal polyamine oxidase (PAO2/3/4). subunit beta2...	0.04	OrthoFinder output from all 47 species
Mp3g04060.1	No alias	subunit beta2 of coat protein complex	0.09	OrthoFinder output from all 47 species
Msp_g01672	No alias	subunit beta2 of coat protein complex & original...	0.06	OrthoFinder output from all 47 species
Nbi_g07405	No alias	subunit beta2 of coat protein complex & original...	0.06	OrthoFinder output from all 47 species
Ore_g10228	No alias	subunit beta2 of coat protein complex & original...	0.05	OrthoFinder output from all 47 species
Pir_g14528	No alias	subunit beta2 of coat protein complex & original...	0.04	OrthoFinder output from all 47 species
Ppi_g01343	No alias	subunit beta2 of coat protein complex & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0058.g014985	No alias	subunit beta2 of coat protein complex & original...	0.02	OrthoFinder output from all 47 species
Sam_g08319	No alias	subunit beta2 of coat protein complex & original...	0.03	OrthoFinder output from all 47 species
Solyc03g120270.4.1	Solyc03g120270	subunit beta2 of coat protein complex	0.1	OrthoFinder output from all 47 species
Solyc06g066730.3.1	Solyc06g066730	subunit beta2 of coat protein complex	0.12	OrthoFinder output from all 47 species
Solyc12g043000.3.1	Solyc12g043000	subunit beta2 of coat protein complex	0.18	OrthoFinder output from all 47 species
Spa_g10496	No alias	subunit beta2 of coat protein complex & original...	0.06	OrthoFinder output from all 47 species
Spa_g17544	No alias	subunit beta2 of coat protein complex & original...	0.03	OrthoFinder output from all 47 species
Spa_g50190	No alias	subunit beta2 of coat protein complex & original...	0.02	OrthoFinder output from all 47 species
Zm00001e014494_P001	Zm00001e014494	subunit beta2 of coat protein complex	0.14	OrthoFinder output from all 47 species
Zm00001e024969_P001	Zm00001e024969	subunit beta2 of coat protein complex	0.18	OrthoFinder output from all 47 species
Zm00001e030001_P002	Zm00001e030001	subunit beta2 of coat protein complex	0.07	OrthoFinder output from all 47 species
Zm00001e036524_P002	Zm00001e036524	subunit beta2 of coat protein complex	0.1	OrthoFinder output from all 47 species
Zm00001e037375_P002	Zm00001e037375	subunit beta2 of coat protein complex	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005996	monosaccharide metabolic process	None	Extended
BP	GO:0006006	glucose metabolic process	None	Extended
BP	GO:0006094	gluconeogenesis	RCA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007010	cytoskeleton organization	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	RCA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0019318	hexose metabolic process	None	Extended
BP	GO:0019319	hexose biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0030117	membrane coat	None	Extended
CC	GO:0030120	vesicle coat	None	Extended
CC	GO:0030126	COPI vesicle coat	ISS	Interproscan
BP	GO:0030163	protein catabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046364	monosaccharide biosynthetic process	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
CC	GO:0005635	nuclear envelope	IEP	HCCA
CC	GO:0005768	endosome	IEP	HCCA
CC	GO:0005794	Golgi apparatus	IEP	HCCA
CC	GO:0005802	trans-Golgi network	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006073	cellular glucan metabolic process	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006897	endocytosis	IEP	HCCA
MF	GO:0008509	monoatomic anion transmembrane transporter activity	IEP	HCCA
MF	GO:0008511	sodium:potassium:chloride symporter activity	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009250	glucan biosynthetic process	IEP	HCCA
BP	GO:0009306	protein secretion	IEP	HCCA
CC	GO:0009504	cell plate	IEP	HCCA
CC	GO:0009524	phragmoplast	IEP	HCCA
BP	GO:0009555	pollen development	IEP	HCCA
MF	GO:0009674	potassium:sodium symporter activity	IEP	HCCA
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IEP	HCCA
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015081	sodium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	HCCA
MF	GO:0015108	chloride transmembrane transporter activity	IEP	HCCA
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015293	symporter activity	IEP	HCCA
MF	GO:0015294	solute:monoatomic cation symporter activity	IEP	HCCA
MF	GO:0015296	monoatomic anion:monoatomic cation symporter activity	IEP	HCCA
MF	GO:0015370	solute:sodium symporter activity	IEP	HCCA
MF	GO:0015373	monoatomic anion:sodium symporter activity	IEP	HCCA
MF	GO:0015377	chloride:monoatomic cation symporter activity	IEP	HCCA
MF	GO:0015378	sodium:chloride symporter activity	IEP	HCCA
MF	GO:0015379	potassium:chloride symporter activity	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
BP	GO:0016926	protein desumoylation	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
MF	GO:0022853	active monoatomic ion transmembrane transporter activity	IEP	HCCA
BP	GO:0030243	cellulose metabolic process	IEP	HCCA
BP	GO:0030244	cellulose biosynthetic process	IEP	HCCA
CC	GO:0031410	cytoplasmic vesicle	IEP	HCCA
CC	GO:0031982	vesicle	IEP	HCCA
CC	GO:0031984	organelle subcompartment	IEP	HCCA
BP	GO:0032940	secretion by cell	IEP	HCCA
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:0035592	establishment of protein localization to extracellular region	IEP	HCCA
BP	GO:0042743	hydrogen peroxide metabolic process	IEP	HCCA
BP	GO:0044042	glucan metabolic process	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
BP	GO:0046903	secretion	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0048229	gametophyte development	IEP	HCCA
BP	GO:0050665	hydrogen peroxide biosynthetic process	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051273	beta-glucan metabolic process	IEP	HCCA
BP	GO:0051274	beta-glucan biosynthetic process	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0071692	protein localization to extracellular region	IEP	HCCA
BP	GO:0072593	reactive oxygen species metabolic process	IEP	HCCA
CC	GO:0097708	intracellular vesicle	IEP	HCCA
CC	GO:0098791	Golgi apparatus subcompartment	IEP	HCCA
BP	GO:0140352	export from cell	IEP	HCCA
BP	GO:1903409	reactive oxygen species biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006692	Coatomer_WD-assoc_reg	319	763
IPR001680	WD40_repeat	132	171
IPR001680	WD40_repeat	91	127
IPR001680	WD40_repeat	220	256
IPR001680	WD40_repeat	177	215

External Links

No external refs found!

AT3G15980

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation