LOC_Os01g01960 (Os01g0109700)


Aliases : Os01g0109700

Description : 35.1.25 not assigned.no ontology.paired amphipathic helix repeat-containing protein Enhances AtERF7-mediated transcriptional repression. RNAi lines show ABA hypersensitivity. Interacts with ERF7 and HDA19. SIN3-like 3 (SNL3)


Gene families : OG_01_0000397 (Gene family) Phylogenetic Tree(s): OG0000397_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os01g01960
Cluster HCCA cluster: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
AT1G10450 SNL6 SIN3-like 6 0.01 Gene family
AT1G24190 SNL3, ATSIN3, SIN3 SIN3-like 3 0.02 Gene family
AT5G15020 SNL2 SIN3-like 2 0.02 Gene family
Cpa|evm.model.tig00001155.28 No alias 35.1.25 not assigned.no ontology.paired amphipathic... 0.02 Gene family
Cpa|evm.model.tig00021234.23 No alias 35.1.25 not assigned.no ontology.paired amphipathic... 0.01 Gene family
Cre03.g180800 No alias 35.1.25 not assigned.no ontology.paired amphipathic... 0.02 Gene family
GSVIVT01020136001 No alias 35.1.25 not assigned.no ontology.paired amphipathic... 0.02 Gene family
GSVIVT01032579001 No alias 27.3.67 RNA.regulation of transcription.putative... 0.02 Gene family
MA_18241g0010 No alias 35.1.25 not assigned.no ontology.paired amphipathic... 0.03 Gene family
Smo440352 PACid_15404105 35.1.25 not assigned.no ontology.paired amphipathic... 0.02 Gene family
Solyc02g067570.3.1 Solyc02g067570.3 27.3.67 RNA.regulation of transcription.putative... 0.01 Gene family
Solyc02g087360.3.1 Solyc02g087360.3 27.3.67 RNA.regulation of transcription.putative... 0.01 Gene family
Solyc05g006540.3.1 Solyc05g006540.3 35.1.25 not assigned.no ontology.paired amphipathic... 0.03 Gene family
Zm00001d008429 GRMZM2G334457 35.1.25 not assigned.no ontology.paired amphipathic... 0.03 Gene family
Zm00001d040123 GRMZM2G075320 35.1.25 not assigned.no ontology.paired amphipathic... 0.03 Gene family

Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR013194 HDAC_interact_dom 386 478
IPR003822 PAH 72 116
IPR003822 PAH 1 36
IPR003822 PAH 265 308
IPR031693 Sin3_C 1038 1286
No external refs found!