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AT3G15200


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G15200
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00205450 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g25210,... 0.03 OrthoFinder output from all 47 species
AMTR_s00003p00209480 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AMTR_s00022p00121040 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g77360,... 0.04 OrthoFinder output from all 47 species
AMTR_s00022p00129420 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AMTR_s00078p00045650 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g52640,... 0.04 OrthoFinder output from all 47 species
AMTR_s00142p00073110 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g73400,... 0.03 OrthoFinder output from all 47 species
AT5G43820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from all 47 species
Aev_g08644 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g54972 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g07454 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g07047 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dac_g21182 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_11871 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.02 OrthoFinder output from all 47 species
Gb_41835 No alias Pentatricopeptide repeat-containing protein At2g13420,... 0.02 OrthoFinder output from all 47 species
LOC_Os08g28180.1 LOC_Os08g28180 Pentatricopeptide repeat-containing protein At2g13420,... 0.01 OrthoFinder output from all 47 species
MA_21160g0010 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.02 OrthoFinder output from all 47 species
MA_933431g0010 No alias Pentatricopeptide repeat-containing protein At1g20300,... 0.01 OrthoFinder output from all 47 species
Nbi_g18487 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g082390.3.1 Solyc09g082390 Pentatricopeptide repeat-containing protein At3g22670,... 0.02 OrthoFinder output from all 47 species
Tin_g21176 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
CC GO:0022626 cytosolic ribosome IDA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004806 triglyceride lipase activity IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0010393 galacturonan metabolic process IEP HCCA
MF GO:0015562 efflux transmembrane transporter activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0045488 pectin metabolic process IEP HCCA
BP GO:0050829 defense response to Gram-negative bacterium IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 246 294
IPR002885 Pentatricopeptide_repeat 350 397
IPR002885 Pentatricopeptide_repeat 320 347
IPR002885 Pentatricopeptide_repeat 458 486
IPR002885 Pentatricopeptide_repeat 180 207
IPR002885 Pentatricopeptide_repeat 146 172
IPR002885 Pentatricopeptide_repeat 424 452
No external refs found!