AT3G15010

Description : RNA-binding (RRM/RBD/RNP motifs) family protein

Gene families : OG0000537 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000537_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G15010

Target	Alias	Description	ECC score	Gene Family Method
Adi_g059176	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.02	OrthoFinder output from all 47 species
Adi_g075156	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g110403	UBA2A	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.04	OrthoFinder output from all 47 species
Aev_g13458	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.04	OrthoFinder output from all 47 species
Cba_g15611	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.02	OrthoFinder output from all 47 species
Ehy_g03935	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.02	OrthoFinder output from all 47 species
MA_3634858g0010	No alias	UBP1-associated protein 2C OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Ore_g03364	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.02	OrthoFinder output from all 47 species
Pnu_g17682	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.02	OrthoFinder output from all 47 species
Ppi_g02967	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0088.g018592	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.02	OrthoFinder output from all 47 species
Sam_g37747	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.02	OrthoFinder output from all 47 species
Tin_g13917	No alias	regulatory protein *(UBA1/2) of UBP1 activity & original...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	IMP	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008219	cell death	IMP	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009692	ethylene metabolic process	None	Extended
BP	GO:0009693	ethylene biosynthetic process	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010150	leaf senescence	IMP	Interproscan
BP	GO:0032502	developmental process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043449	cellular alkene metabolic process	None	Extended
BP	GO:0043450	alkene biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090693	plant organ senescence	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0120251	hydrocarbon biosynthetic process	None	Extended
BP	GO:0120252	hydrocarbon metabolic process	None	Extended
BP	GO:0120254	olefinic compound metabolic process	None	Extended
BP	GO:0120255	olefinic compound biosynthetic process	None	Extended
BP	GO:1900673	olefin metabolic process	None	Extended
BP	GO:1900674	olefin biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000278	mitotic cell cycle	IEP	HCCA
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
MF	GO:0003729	mRNA binding	IEP	HCCA
MF	GO:0003730	mRNA 3'-UTR binding	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006606	protein import into nucleus	IEP	HCCA
BP	GO:0006650	glycerophospholipid metabolic process	IEP	HCCA
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
BP	GO:0007049	cell cycle	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0009648	photoperiodism	IEP	HCCA
CC	GO:0016604	nuclear body	IEP	HCCA
CC	GO:0016607	nuclear speck	IEP	HCCA
BP	GO:0030422	siRNA processing	IEP	HCCA
BP	GO:0034504	protein localization to nucleus	IEP	HCCA
BP	GO:0035196	miRNA processing	IEP	HCCA
BP	GO:0043687	post-translational protein modification	IEP	HCCA
BP	GO:0045017	glycerolipid biosynthetic process	IEP	HCCA
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	HCCA
BP	GO:0046486	glycerolipid metabolic process	IEP	HCCA
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	HCCA
BP	GO:0048573	photoperiodism, flowering	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051170	import into nucleus	IEP	HCCA
BP	GO:0070918	regulatory ncRNA processing	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	77	144
IPR000504	RRM_dom	169	226

External Links

No external refs found!

AT3G15010

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation