Description : BEST Arabidopsis thaliana protein match is: transcription factor-related (TAIR:AT4G18650.1); Has 560 Blast hits to 560 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 558; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Gene families : OG0001119 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001119_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AT3G14880 | |
Cluster | HCCA: Cluster_107 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT4G18660 | No alias | unknown protein; BEST Arabidopsis thaliana protein match... | 0.05 | OrthoFinder output from all 47 species | |
AT4G18680 | No alias | unknown protein; BEST Arabidopsis thaliana protein match... | 0.05 | OrthoFinder output from all 47 species | |
Aev_g08962 | No alias | DOG-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
LOC_Os05g48650.1 | LOC_Os05g48650 | transcription factor (DOG) | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g01120 | No alias | DOG-type transcription factor & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ore_g42218 | No alias | DOG-type transcription factor & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Pnu_g22337 | GSQ5, DOG1, ATDOG1 | DOG-type transcription factor & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Solyc02g072570.2.1 | GSQ5, DOG1,... | transcription factor (DOG) | 0.04 | OrthoFinder output from all 47 species | |
Solyc03g006120.4.1 | Solyc03g006120 | transcription factor (DOG) | 0.04 | OrthoFinder output from all 47 species | |
Solyc07g062380.1.1 | Solyc07g062380 | transcription factor (DOG) | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0005634 | nucleus | ISM | Interproscan |
BP | GO:0080167 | response to karrikin | IEP | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004180 | carboxypeptidase activity | IEP | HCCA |
MF | GO:0004185 | serine-type carboxypeptidase activity | IEP | HCCA |
BP | GO:0006508 | proteolysis | IEP | HCCA |
BP | GO:0006935 | chemotaxis | IEP | HCCA |
BP | GO:0007275 | multicellular organism development | IEP | HCCA |
MF | GO:0008238 | exopeptidase activity | IEP | HCCA |
BP | GO:0009409 | response to cold | IEP | HCCA |
BP | GO:0009553 | embryo sac development | IEP | HCCA |
BP | GO:0009555 | pollen development | IEP | HCCA |
BP | GO:0009845 | seed germination | IEP | HCCA |
BP | GO:0010183 | pollen tube guidance | IEP | HCCA |
BP | GO:0019538 | protein metabolic process | IEP | HCCA |
BP | GO:0019915 | lipid storage | IEP | HCCA |
BP | GO:0032501 | multicellular organismal process | IEP | HCCA |
BP | GO:0040011 | locomotion | IEP | HCCA |
BP | GO:0042330 | taxis | IEP | HCCA |
BP | GO:0048229 | gametophyte development | IEP | HCCA |
BP | GO:0048443 | stamen development | IEP | HCCA |
BP | GO:0048825 | cotyledon development | IEP | HCCA |
BP | GO:0048827 | phyllome development | IEP | HCCA |
BP | GO:0050826 | response to freezing | IEP | HCCA |
BP | GO:0050918 | positive chemotaxis | IEP | HCCA |
BP | GO:0051235 | maintenance of location | IEP | HCCA |
MF | GO:0070008 | serine-type exopeptidase activity | IEP | HCCA |
BP | GO:0099402 | plant organ development | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR025422 | TGA_domain | 24 | 105 |
No external refs found! |