AT3G14310 (ATPME3, PME3)

Aliases : ATPME3, PME3

Description : pectin methylesterase 3

Gene families : OG0000147 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000147_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G14310

Target	Alias	Description	ECC score	Gene Family Method
Aev_g08266	ATPMEPCRF, PMEPCRF	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Aev_g12203	PME1, ATPME1	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Aop_g08872	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.06	OrthoFinder output from all 47 species
Aop_g61344	ATPME2, PME2	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Ceric.19G055200.1	Ceric.19G055200	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Dde_g23590	ATPME2, PME2	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
GSVIVT01027359001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	OrthoFinder output from all 47 species
Gb_21388	ATPMEPCRF, PMEPCRF	pectin methylesterase	0.06	OrthoFinder output from all 47 species
Gb_28159	ATPMEPCRF, PMEPCRF	pectin methylesterase	0.07	OrthoFinder output from all 47 species
LOC_Os01g13320.1	LOC_Os01g13320	pectin methylesterase	0.03	OrthoFinder output from all 47 species
LOC_Os01g20980.1	ATPMEPCRB, LOC_Os01g20980	pectin methylesterase	0.03	OrthoFinder output from all 47 species
LOC_Os01g21034.1	ATPME3, PME3,...	pectin methylesterase	0.02	OrthoFinder output from all 47 species
LOC_Os05g29790.1	ATPMEPCRB, LOC_Os05g29790	pectin methylesterase	0.02	OrthoFinder output from all 47 species
LOC_Os08g34900.1	LOC_Os08g34900	pectin methylesterase	0.02	OrthoFinder output from all 47 species
MA_10434624g0010	ATPME2, PME2	Pectinesterase/pectinesterase inhibitor U1 OS=Solanum...	0.03	OrthoFinder output from all 47 species
MA_10434624g0020	ATPME2, PME2	pectin methylesterase	0.03	OrthoFinder output from all 47 species
MA_133919g0010	ATPMEPCRB	pectin methylesterase	0.03	OrthoFinder output from all 47 species
MA_436039g0010	ATPME2, PME2	pectin methylesterase	0.09	OrthoFinder output from all 47 species
Pir_g18600	ATPME2, PME2	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Ppi_g55328	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g06942	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.04	OrthoFinder output from all 47 species
Smo266995	ATPME2, PME2	Cell wall.pectin.homogalacturonan.modification and...	0.02	OrthoFinder output from all 47 species
Solyc03g083360.3.1	ATPMEPCRF,...	pectin methylesterase	0.08	OrthoFinder output from all 47 species
Solyc09g075350.4.1	Solyc09g075350	pectin methylesterase	0.02	OrthoFinder output from all 47 species
Solyc12g099410.2.1	Solyc12g099410	pectin methylesterase	0.03	OrthoFinder output from all 47 species
Spa_g20096	ATPME2, PME2	pectin methylesterase & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g42089	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	None	Extended
CC	GO:0005618	cell wall	IDA	Interproscan
CC	GO:0005737	cytoplasm	IDA	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006544	glycine metabolic process	None	Extended
BP	GO:0006546	glycine catabolic process	RCA	Interproscan
BP	GO:0006568	tryptophan metabolic process	None	Extended
BP	GO:0006569	tryptophan catabolic process	RCA	Interproscan
BP	GO:0006576	biogenic amine metabolic process	None	Extended
BP	GO:0006586	indolalkylamine metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009063	amino acid catabolic process	None	Extended
BP	GO:0009069	serine family amino acid metabolic process	None	Extended
BP	GO:0009071	serine family amino acid catabolic process	None	Extended
BP	GO:0009072	aromatic amino acid metabolic process	None	Extended
BP	GO:0009074	aromatic amino acid family catabolic process	None	Extended
BP	GO:0009308	amine metabolic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	None	Extended
BP	GO:0009620	response to fungus	IEP	Interproscan
BP	GO:0009624	response to nematode	IMP	Interproscan
BP	GO:0009683	indoleacetic acid metabolic process	None	Extended
BP	GO:0009684	indoleacetic acid biosynthetic process	RCA	Interproscan
BP	GO:0009850	auxin metabolic process	None	Extended
BP	GO:0009851	auxin biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010817	regulation of hormone levels	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
BP	GO:0016054	organic acid catabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
MF	GO:0030599	pectinesterase activity	IDA	Interproscan
MF	GO:0030599	pectinesterase activity	IMP	Interproscan
MF	GO:0030599	pectinesterase activity	ISS	Interproscan
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042430	indole-containing compound metabolic process	None	Extended
BP	GO:0042435	indole-containing compound biosynthetic process	None	Extended
BP	GO:0042436	indole-containing compound catabolic process	None	Extended
BP	GO:0042445	hormone metabolic process	None	Extended
BP	GO:0042446	hormone biosynthetic process	None	Extended
BP	GO:0042742	defense response to bacterium	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044282	small molecule catabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0046395	carboxylic acid catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
CC	GO:0048046	apoplast	IDA	Interproscan
BP	GO:0050829	defense response to Gram-negative bacterium	IMP	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072330	monocarboxylic acid biosynthetic process	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901605	alpha-amino acid metabolic process	None	Extended
BP	GO:1901606	alpha-amino acid catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005911	cell-cell junction	IEP	HCCA
CC	GO:0009505	plant-type cell wall	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000070	Pectinesterase_cat	281	577
IPR006501	Pectinesterase_inhib_dom	59	212

External Links

No external refs found!

AT3G14310 (ATPME3, PME3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation