AT3G13040

Description : myb-like HTH transcriptional regulator family protein

Gene families : OG0000036 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G13040

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00025p00224230	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.03	OrthoFinder output from all 47 species
AMTR_s00119p00095480	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.03	OrthoFinder output from all 47 species
AT5G18240	ATMYR1, MYR1	myb-related protein 1	0.04	OrthoFinder output from all 47 species
Adi_g077902	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g078895	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g08018	No alias	GARP subgroup PHL transcription factor & original...	0.02	OrthoFinder output from all 47 species
Als_g03610	No alias	GARP subgroup PHL transcription factor & original...	0.04	OrthoFinder output from all 47 species
Als_g30198	PHR1, AtPHR1	GARP subgroup PHL transcription factor & original...	0.02	OrthoFinder output from all 47 species
Aob_g01763	No alias	GARP subgroup PHL transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aop_g29692	PHR1, AtPHR1	GARP subgroup PHL transcription factor & original...	0.02	OrthoFinder output from all 47 species
Aspi01Gene33723.t1	Aspi01Gene33723	transcription factor *(CLAUSA) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene40313.t1	KAN, KAN1,...	KANADI-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0006.g009521	No alias	not classified & original description: CDS=1-1092	0.03	OrthoFinder output from all 47 species
Azfi_s0089.g042590	No alias	not classified & original description: CDS=1-831	0.02	OrthoFinder output from all 47 species
Azfi_s0093.g043264	PHR1, AtPHR1	GARP subgroup PHL transcription factor & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0481.g073115	No alias	GARP subgroup PHL transcription factor & original...	0.03	OrthoFinder output from all 47 species
Cba_g15047	No alias	GARP subgroup PHL transcription factor & original...	0.02	OrthoFinder output from all 47 species
Cba_g17095	PHR1, AtPHR1	GARP subgroup PHL transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ceric.21G027900.1	Ceric.21G027900	GARP subgroup PHL transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.22G040100.1	Ceric.22G040100	GARP subgroup PHL transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.31G067100.1	Ceric.31G067100	GARP subgroup PHL transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ceric.33G006800.1	Ceric.33G006800	GARP subgroup PHL transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dac_g08384	No alias	GARP subgroup PHL transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dac_g44014	No alias	transcription factor *(CLAUSA) & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g08815	KAN2	KANADI-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g15012	No alias	transcription factor *(CLAUSA) & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g17436	No alias	GARP subgroup PHL transcription factor & original...	0.02	OrthoFinder output from all 47 species
Dde_g01407	No alias	GARP subgroup PHL transcription factor & original...	0.02	OrthoFinder output from all 47 species
Dde_g23417	KAN, KAN1	KANADI-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g39292	No alias	GARP subgroup PHL transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ehy_g00938	No alias	transcription factor *(CLAUSA) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g06613	No alias	transcription factor *(CLAUSA) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g32284	KAN4, ATS	KANADI-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01015900001	APL, WDY	RNA biosynthesis.transcriptional activation.MYB...	0.03	OrthoFinder output from all 47 species
GSVIVT01022645001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	OrthoFinder output from all 47 species
GSVIVT01025867001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	OrthoFinder output from all 47 species
Gb_25992	No alias	G2-like GARP transcription factor	0.02	OrthoFinder output from all 47 species
LOC_Os02g04640.1	LOC_Os02g04640	G2-like GARP transcription factor	0.08	OrthoFinder output from all 47 species
LOC_Os02g07770.1	APL, WDY, LOC_Os02g07770	G2-like GARP transcription factor	0.03	OrthoFinder output from all 47 species
LOC_Os06g45890.1	LOC_Os06g45890	G2-like GARP transcription factor	0.02	OrthoFinder output from all 47 species
LOC_Os09g12770.1	LOC_Os09g12770	G2-like GARP transcription factor	0.04	OrthoFinder output from all 47 species
Lfl_g08455	PHL1	GARP subgroup PHL transcription factor & original...	0.02	OrthoFinder output from all 47 species
Lfl_g32204	KAN2	KANADI-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Mp4g01560.1	No alias	G2-like GARP transcription factor	0.04	OrthoFinder output from all 47 species
Msp_g25465	No alias	GARP subgroup PHL transcription factor & original...	0.02	OrthoFinder output from all 47 species
Msp_g35324	No alias	GARP subgroup PHL transcription factor & original...	0.03	OrthoFinder output from all 47 species
Nbi_g15270	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g09624	PHR1, AtPHR1	GARP subgroup PHL transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ppi_g04532	No alias	GARP subgroup PHL transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005338	No alias	GARP subgroup PHL transcription factor & original...	0.02	OrthoFinder output from all 47 species
Sam_g12596	No alias	transcription factor *(CLAUSA) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g18448	No alias	KANADI-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g18907	No alias	transcription factor *(CLAUSA) & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g01742	No alias	GARP subgroup PHL transcription factor & original...	0.03	OrthoFinder output from all 47 species
Zm00001e001526_P001	Zm00001e001526	G2-like GARP transcription factor	0.02	OrthoFinder output from all 47 species
Zm00001e013626_P001	Zm00001e013626	G2-like GARP transcription factor	0.03	OrthoFinder output from all 47 species
Zm00001e022412_P003	KAN2, Zm00001e022412	G2-like GARP transcription factor	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006778	porphyrin-containing compound metabolic process	None	Extended
BP	GO:0006787	porphyrin-containing compound catabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0015994	chlorophyll metabolic process	None	Extended
BP	GO:0015996	chlorophyll catabolic process	RCA	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0033013	tetrapyrrole metabolic process	None	Extended
BP	GO:0033015	tetrapyrrole catabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042440	pigment metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0046149	pigment catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005215	transporter activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005244	voltage-gated monoatomic ion channel activity	IEP	HCCA
MF	GO:0005247	voltage-gated chloride channel activity	IEP	HCCA
MF	GO:0005253	monoatomic anion channel activity	IEP	HCCA
MF	GO:0005254	chloride channel activity	IEP	HCCA
MF	GO:0005315	inorganic phosphate transmembrane transporter activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005509	calcium ion binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
BP	GO:0006090	pyruvate metabolic process	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006096	glycolytic process	IEP	HCCA
BP	GO:0006163	purine nucleotide metabolic process	IEP	HCCA
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	HCCA
BP	GO:0006665	sphingolipid metabolic process	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006757	ATP generation from ADP	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006820	monoatomic anion transport	IEP	HCCA
BP	GO:0006821	chloride transport	IEP	HCCA
BP	GO:0006833	water transport	IEP	HCCA
BP	GO:0006970	response to osmotic stress	IEP	HCCA
BP	GO:0006972	hyperosmotic response	IEP	HCCA
BP	GO:0007030	Golgi organization	IEP	HCCA
MF	GO:0008308	voltage-gated monoatomic anion channel activity	IEP	HCCA
MF	GO:0008509	monoatomic anion transmembrane transporter activity	IEP	HCCA
BP	GO:0008610	lipid biosynthetic process	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009266	response to temperature stimulus	IEP	HCCA
BP	GO:0009651	response to salt stress	IEP	HCCA
BP	GO:0009750	response to fructose	IEP	HCCA
BP	GO:0009791	post-embryonic development	IEP	HCCA
BP	GO:0010038	response to metal ion	IEP	HCCA
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	HCCA
MF	GO:0015108	chloride transmembrane transporter activity	IEP	HCCA
MF	GO:0015203	polyamine transmembrane transporter activity	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
BP	GO:0015698	inorganic anion transport	IEP	HCCA
BP	GO:0015846	polyamine transport	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
BP	GO:0016998	cell wall macromolecule catabolic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
MF	GO:0022832	voltage-gated channel activity	IEP	HCCA
MF	GO:0022836	gated channel activity	IEP	HCCA
MF	GO:0022839	monoatomic ion gated channel activity	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
BP	GO:0030148	sphingolipid biosynthetic process	IEP	HCCA
BP	GO:0032880	regulation of protein localization	IEP	HCCA
BP	GO:0042044	fluid transport	IEP	HCCA
BP	GO:0042743	hydrogen peroxide metabolic process	IEP	HCCA
BP	GO:0042744	hydrogen peroxide catabolic process	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0045309	protein phosphorylated amino acid binding	IEP	HCCA
BP	GO:0046031	ADP metabolic process	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046467	membrane lipid biosynthetic process	IEP	HCCA
BP	GO:0046519	sphingoid metabolic process	IEP	HCCA
BP	GO:0046520	sphingoid biosynthetic process	IEP	HCCA
BP	GO:0046686	response to cadmium ion	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
BP	GO:0046939	nucleotide phosphorylation	IEP	HCCA
BP	GO:0048528	post-embryonic root development	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
MF	GO:0051219	phosphoprotein binding	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0060341	regulation of cellular localization	IEP	HCCA
BP	GO:0072521	purine-containing compound metabolic process	IEP	HCCA
BP	GO:0080167	response to karrikin	IEP	HCCA
BP	GO:0090696	post-embryonic plant organ development	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001005	SANT/Myb	243	294
IPR025756	Myb_CC_LHEQLE	331	378

External Links

No external refs found!

AT3G13040

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation