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  5. AT3G12970

AT3G12970


Description : unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56020.1); Has 2408 Blast hits to 418 proteins in 91 species: Archae - 0; Bacteria - 41; Metazoa - 198; Fungi - 63; Plants - 125; Viruses - 13; Other Eukaryotes - 1968 (source: NCBI BLink).


Gene families : OG0001961 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001961_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G12970
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
AT1G56020 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.03 OrthoFinder output from all 47 species
AT5G66800 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.01 OrthoFinder output from all 47 species
Adi_g024728 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g116381 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05194 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g15808 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g09049 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os06g46250.1 LOC_Os06g46250 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc02g090720.3.1 Solyc02g090720 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Zm00001e013706_P001 Zm00001e013706 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004844 uracil DNA N-glycosylase activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006261 DNA-templated DNA replication IEP HCCA
BP GO:0006268 DNA unwinding involved in DNA replication IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006312 mitotic recombination IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008356 asymmetric cell division IEP HCCA
BP GO:0008361 regulation of cell size IEP HCCA
BP GO:0009410 response to xenobiotic stimulus IEP HCCA
BP GO:0009624 response to nematode IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
CC GO:0009925 basal plasma membrane IEP HCCA
BP GO:0009944 polarity specification of adaxial/abaxial axis IEP HCCA
BP GO:0010016 shoot system morphogenesis IEP HCCA
BP GO:0010073 meristem maintenance IEP HCCA
BP GO:0010229 inflorescence development IEP HCCA
BP GO:0010338 leaf formation IEP HCCA
BP GO:0010358 leaf shaping IEP HCCA
BP GO:0016570 histone modification IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
BP GO:0032535 regulation of cellular component size IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
CC GO:0045177 apical part of cell IEP HCCA
BP GO:0046685 response to arsenic-containing substance IEP HCCA
BP GO:0048439 flower morphogenesis IEP HCCA
BP GO:0048449 floral organ formation IEP HCCA
BP GO:0048451 petal formation IEP HCCA
BP GO:0048453 sepal formation IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048598 embryonic morphogenesis IEP HCCA
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP HCCA
BP GO:0048825 cotyledon development IEP HCCA
BP GO:0048826 cotyledon morphogenesis IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0050793 regulation of developmental process IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0065001 specification of axis polarity IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090066 regulation of anatomical structure size IEP HCCA
MF GO:0097506 deaminated base DNA N-glycosylase activity IEP HCCA
CC GO:0098590 plasma membrane region IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1905393 plant organ formation IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA

No InterPro domains available for this sequence

No external refs found!