AT3G11550

Description : Uncharacterised protein family (UPF0497)

Gene families : OG0001933 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001933_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G11550
Cluster	HCCA: Cluster_25

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00265970	evm_27.TU.AmTr_v1...	Casparian strip membrane protein 3 OS=Sorghum bicolor	0.07	OrthoFinder output from all 47 species
AMTR_s00016p00176090	evm_27.TU.AmTr_v1...	CASP-like protein 1F1 OS=Ricinus communis	0.05	OrthoFinder output from all 47 species
AMTR_s00016p00177940	evm_27.TU.AmTr_v1...	No description available	0.04	OrthoFinder output from all 47 species
AMTR_s00016p00178190	evm_27.TU.AmTr_v1...	CASP-like protein 1F1 OS=Vitis vinifera	0.06	OrthoFinder output from all 47 species
AMTR_s00040p00135930	evm_27.TU.AmTr_v1...	Casparian strip membrane protein 2 OS=Vitis vinifera	0.1	OrthoFinder output from all 47 species
AMTR_s00057p00159510	evm_27.TU.AmTr_v1...	CASP-like protein 1D1 OS=Ricinus communis	0.08	OrthoFinder output from all 47 species
AMTR_s00092p00142720	evm_27.TU.AmTr_v1...	CASP-like protein 1B2 OS=Populus trichocarpa	0.03	OrthoFinder output from all 47 species
AT3G06390	No alias	Uncharacterised protein family (UPF0497)	0.05	OrthoFinder output from all 47 species
AT4G20390	No alias	Uncharacterised protein family (UPF0497)	0.04	OrthoFinder output from all 47 species
AT5G44550	No alias	Uncharacterised protein family (UPF0497)	0.04	OrthoFinder output from all 47 species
GSVIVT01008618001	No alias	CASP-like protein 1F1 OS=Vitis vinifera	0.05	OrthoFinder output from all 47 species
GSVIVT01011443001	No alias	Casparian strip membrane protein 3 OS=Vitis vinifera	0.02	OrthoFinder output from all 47 species
GSVIVT01020544001	No alias	CASP-like protein 1C2 OS=Vitis vinifera	0.06	OrthoFinder output from all 47 species
GSVIVT01037957001	No alias	CASP-like protein 1B2 OS=Vitis vinifera	0.06	OrthoFinder output from all 47 species
Gb_11696	No alias	CASP-like protein 1U1 OS=Picea sitchensis...	0.04	OrthoFinder output from all 47 species
Gb_11697	No alias	CASP-like protein 1U1 OS=Picea sitchensis...	0.03	OrthoFinder output from all 47 species
Gb_12159	No alias	CASP-like protein 1U1 OS=Picea sitchensis...	0.03	OrthoFinder output from all 47 species
Gb_26811	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Gb_26814	No alias	CASP-like protein 1U1 OS=Picea sitchensis...	0.03	OrthoFinder output from all 47 species
LOC_Os01g13560.1	LOC_Os01g13560	CASP-like protein 1C1 OS=Oryza sativa subsp. japonica...	0.03	OrthoFinder output from all 47 species
LOC_Os02g36845.1	LOC_Os02g36845	Casparian strip membrane protein 7 OS=Oryza sativa...	0.05	OrthoFinder output from all 47 species
LOC_Os04g38690.1	LOC_Os04g38690	Casparian strip membrane protein 1 OS=Oryza rufipogon...	0.12	OrthoFinder output from all 47 species
LOC_Os04g58760.1	LOC_Os04g58760	Casparian strip membrane protein 1 OS=Oryza sativa...	0.11	OrthoFinder output from all 47 species
LOC_Os05g15630.1	LOC_Os05g15630	CASP-like protein BLE3 OS=Oryza sativa subsp. indica...	0.08	OrthoFinder output from all 47 species
LOC_Os06g12500.1	LOC_Os06g12500	Casparian strip membrane protein 3 OS=Oryza sativa...	0.13	OrthoFinder output from all 47 species
LOC_Os08g01160.1	LOC_Os08g01160	Casparian strip membrane protein 2 OS=Oryza sativa...	0.09	OrthoFinder output from all 47 species
LOC_Os12g41690.1	LOC_Os12g41690	CASP-like protein 1B1 OS=Oryza sativa subsp. japonica...	0.03	OrthoFinder output from all 47 species
MA_1041g0010	No alias	Casparian strip membrane protein 2 OS=Triphysaria...	0.05	OrthoFinder output from all 47 species
MA_10431939g0010	No alias	CASP-like protein 1U1 OS=Picea sitchensis...	0.03	OrthoFinder output from all 47 species
MA_3155878g0010	No alias	no hits & (original description: none)	0.08	OrthoFinder output from all 47 species
MA_5227376g0010	No alias	Casparian strip membrane protein 1 OS=Picea glauca...	0.06	OrthoFinder output from all 47 species
MA_5618864g0010	No alias	CASP-like protein 1U1 OS=Picea sitchensis...	0.06	OrthoFinder output from all 47 species
MA_64798g0010	No alias	Casparian strip membrane protein 1 OS=Picea glauca...	0.05	OrthoFinder output from all 47 species
MA_67384g0020	No alias	CASP-like protein 1U1 OS=Picea sitchensis...	0.04	OrthoFinder output from all 47 species
MA_90653g0010	No alias	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
MA_93690g0010	No alias	Casparian strip membrane protein 1 OS=Pinus taeda...	0.09	OrthoFinder output from all 47 species
MA_94788g0010	No alias	CASP-like protein 1U1 OS=Picea sitchensis...	0.05	OrthoFinder output from all 47 species
Pir_g23305	No alias	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Solyc02g067190.4.1	Solyc02g067190	Casparian strip membrane protein 1 OS=Solanum tuberosum...	0.05	OrthoFinder output from all 47 species
Solyc02g069730.3.1	Solyc02g069730	CASP-like protein 1B1 OS=Ricinus communis...	0.05	OrthoFinder output from all 47 species
Solyc02g088160.4.1	Solyc02g088160	Casparian strip membrane protein 3 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
Solyc04g005620.3.1	Solyc04g005620	Casparian strip membrane protein 2 OS=Solanum demissum...	0.17	OrthoFinder output from all 47 species
Solyc05g007790.3.1	Solyc05g007790	Casparian strip membrane protein 2 OS=Solanum demissum...	0.02	OrthoFinder output from all 47 species
Solyc06g074230.3.1	Solyc06g074230	Casparian strip membrane protein 2 OS=Triphysaria...	0.17	OrthoFinder output from all 47 species
Solyc09g010200.4.1	Solyc09g010200	Casparian strip membrane protein 1 OS=Nicotiana tabacum...	0.16	OrthoFinder output from all 47 species
Solyc10g083250.2.1	Solyc10g083250	Casparian strip membrane protein 1 OS=Nicotiana tabacum...	0.17	OrthoFinder output from all 47 species
Zm00001e003216_P001	Zm00001e003216	CASP-like protein 1B1 OS=Zea mays (sp\|b6tuh4\|cspl2_maize : 130.0)	0.06	OrthoFinder output from all 47 species
Zm00001e006491_P001	Zm00001e006491	Casparian strip membrane protein 2 OS=Zea mays...	0.08	OrthoFinder output from all 47 species
Zm00001e015806_P001	Zm00001e015806	Casparian strip membrane protein 3 OS=Sorghum bicolor...	0.07	OrthoFinder output from all 47 species
Zm00001e021080_P001	Zm00001e021080	CASP-like protein 1U4 OS=Sorghum bicolor...	0.09	OrthoFinder output from all 47 species
Zm00001e024279_P001	Zm00001e024279	Casparian strip membrane protein 2 OS=Sorghum bicolor...	0.06	OrthoFinder output from all 47 species
Zm00001e026902_P001	Zm00001e026902	CASP-like protein 1C2 OS=Zea mays (sp\|b6szu6\|cspl5_maize : 227.0)	0.06	OrthoFinder output from all 47 species
Zm00001e036094_P001	Zm00001e036094	Casparian strip membrane protein 1 OS=Zea mays...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0007043	cell-cell junction assembly	IDA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010383	cell wall polysaccharide metabolic process	None	Extended
BP	GO:0010410	hemicellulose metabolic process	None	Extended
BP	GO:0010413	glucuronoxylan metabolic process	RCA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0033692	cellular polysaccharide biosynthetic process	None	Extended
BP	GO:0034329	cell junction assembly	None	Extended
BP	GO:0034330	cell junction organization	None	Extended
BP	GO:0034637	cellular carbohydrate biosynthetic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0042545	cell wall modification	IMP	Interproscan
MF	GO:0042802	identical protein binding	None	Extended
MF	GO:0042803	protein homodimerization activity	ISS	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044036	cell wall macromolecule metabolic process	None	Extended
BP	GO:0044038	cell wall macromolecule biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
BP	GO:0045216	cell-cell junction organization	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0045491	xylan metabolic process	None	Extended
BP	GO:0045492	xylan biosynthetic process	RCA	Interproscan
MF	GO:0046983	protein dimerization activity	None	Extended
CC	GO:0048226	Casparian strip	IDA	Interproscan
BP	GO:0070589	cellular component macromolecule biosynthetic process	None	Extended
BP	GO:0070592	cell wall polysaccharide biosynthetic process	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000325	plant-type vacuole	IEP	HCCA
MF	GO:0005275	amine transmembrane transporter activity	IEP	HCCA
MF	GO:0005372	water transmembrane transporter activity	IEP	HCCA
BP	GO:0009698	phenylpropanoid metabolic process	IEP	HCCA
BP	GO:0009699	phenylpropanoid biosynthetic process	IEP	HCCA
CC	GO:0009705	plant-type vacuole membrane	IEP	HCCA
BP	GO:0009806	lignan metabolic process	IEP	HCCA
BP	GO:0009807	lignan biosynthetic process	IEP	HCCA
BP	GO:0009809	lignin biosynthetic process	IEP	HCCA
BP	GO:0010053	root epidermal cell differentiation	IEP	HCCA
BP	GO:0010167	response to nitrate	IEP	HCCA
BP	GO:0010345	suberin biosynthetic process	IEP	HCCA
MF	GO:0015200	methylammonium transmembrane transporter activity	IEP	HCCA
MF	GO:0015250	water channel activity	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
BP	GO:0015698	inorganic anion transport	IEP	HCCA
BP	GO:0015706	nitrate transmembrane transport	IEP	HCCA
BP	GO:0019748	secondary metabolic process	IEP	HCCA
BP	GO:0021700	developmental maturation	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
BP	GO:0030154	cell differentiation	IEP	HCCA
CC	GO:0042807	central vacuole	IEP	HCCA
BP	GO:0044550	secondary metabolite biosynthetic process	IEP	HCCA
BP	GO:0048469	cell maturation	IEP	HCCA
BP	GO:0048764	trichoblast maturation	IEP	HCCA
BP	GO:0048765	root hair cell differentiation	IEP	HCCA
BP	GO:0048869	cellular developmental process	IEP	HCCA
BP	GO:0055085	transmembrane transport	IEP	HCCA
BP	GO:0071695	anatomical structure maturation	IEP	HCCA
BP	GO:0090627	plant epidermal cell differentiation	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098661	inorganic anion transmembrane transport	IEP	HCCA
BP	GO:1901698	response to nitrogen compound	IEP	HCCA
BP	GO:1902025	nitrate import	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006702	CASP_dom	41	189

External Links

No external refs found!

AT3G11550

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation