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AT3G10360 (APUM4, PUM4)


Aliases : APUM4, PUM4

Description : pumilio 4


Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G10360

Target Alias Description ECC score Gene Family Method Actions
AT3G20250 PUM5, APUM5 pumilio 5 0.02 OrthoFinder output from all 47 species
Lfl_g10215 APUM4, PUM4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g30615 PUM1, APUM1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10159883g0010 PUM5, APUM5 Pumilio homolog 5 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_42348g0010 PUM3, APUM3 Pumilio homolog 3 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Ppi_g06503 APUM2, PUM2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0136.g022409 APUM2, PUM2 not classified & original description: CDS=679-3840 0.03 OrthoFinder output from all 47 species
Zm00001e016242_P002 PUM1, APUM1,... Pumilio homolog 4 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
MF GO:0003729 mRNA binding IDA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0004712 protein serine/threonine/tyrosine kinase activity IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0010075 regulation of meristem growth IEP HCCA
BP GO:0019321 pentose metabolic process IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
BP GO:0040008 regulation of growth IEP HCCA
BP GO:0042732 D-xylose metabolic process IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048638 regulation of developmental growth IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR012940 NABP 313 663
IPR001313 Pumilio_RNA-bd_rpt 773 806
IPR001313 Pumilio_RNA-bd_rpt 882 912
IPR001313 Pumilio_RNA-bd_rpt 664 698
IPR001313 Pumilio_RNA-bd_rpt 738 766
IPR001313 Pumilio_RNA-bd_rpt 704 732
IPR001313 Pumilio_RNA-bd_rpt 931 949
IPR001313 Pumilio_RNA-bd_rpt 848 878
IPR001313 Pumilio_RNA-bd_rpt 809 842
No external refs found!