AT3G10340 (PAL4)

Aliases : PAL4

Description : phenylalanine ammonia-lyase 4

Gene families : OG0000270 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000270_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G10340

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00024p00201930	ATPAL2, PAL2,...	Secondary metabolism.phenolics.p-coumaroyl-CoA...	0.03	OrthoFinder output from all 47 species
Adi_g014959	ATPAL1, PAL1	EC_4.3 carbon-nitrogen lyase & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g059368	ATPAL1, PAL1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g084112	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g107906	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g39212	ATPAL1, PAL1	EC_4.3 carbon-nitrogen lyase & original description: none	0.02	OrthoFinder output from all 47 species
Als_g20991	ATPAL2, PAL2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g37142	ATPAL1, PAL1	EC_4.3 carbon-nitrogen lyase & original description: none	0.02	OrthoFinder output from all 47 species
Als_g50299	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g06672	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g07268	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g08415	ATPAL2, PAL2	EC_4.3 carbon-nitrogen lyase & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g11634	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g14595	ATPAL1, PAL1	EC_4.3 carbon-nitrogen lyase & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g54306	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene05558.t1	PAL4, Aspi01Gene05558	EC_4.3 carbon-nitrogen lyase & original description: none	0.05	OrthoFinder output from all 47 species
Azfi_s0063.g035292	PAL4	EC_4.3 carbon-nitrogen lyase & original description: CDS=1-2358	0.03	OrthoFinder output from all 47 species
Azfi_s0163.g054246	PAL4	EC_4.3 carbon-nitrogen lyase & original description: CDS=1-2322	0.04	OrthoFinder output from all 47 species
Azfi_s0205.g057722	PAL4	EC_4.3 carbon-nitrogen lyase & original description: CDS=1-2322	0.05	OrthoFinder output from all 47 species
Ceric.1Z056200.1	PAL4, Ceric.1Z056200	EC_4.3 carbon-nitrogen lyase & original description:...	0.03	OrthoFinder output from all 47 species
Dac_g09400	ATPAL1, PAL1	EC_4.3 carbon-nitrogen lyase & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g14924	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g27041	ATPAL2, PAL2	EC_4.3 carbon-nitrogen lyase & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g40579	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g24302	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g33771	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g35691	ATPAL1, PAL1	EC_4.3 carbon-nitrogen lyase & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g36866	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g07006	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g18475	ATPAL1, PAL1	EC_4.3 carbon-nitrogen lyase & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01015123001	PAL4	Phenylalanine ammonia-lyase OS=Pinus taeda	0.03	OrthoFinder output from all 47 species
GSVIVT01015124001	ATPAL2, PAL2	Secondary metabolism.phenolics.p-coumaroyl-CoA...	0.04	OrthoFinder output from all 47 species
GSVIVT01015138001	ATPAL2, PAL2	Secondary metabolism.phenolics.p-coumaroyl-CoA...	0.06	OrthoFinder output from all 47 species
GSVIVT01015140001	ATPAL2, PAL2	Phenylalanine ammonia-lyase OS=Pinus taeda	0.02	OrthoFinder output from all 47 species
GSVIVT01024292001	ATPAL1, PAL1	Secondary metabolism.phenolics.p-coumaroyl-CoA...	0.03	OrthoFinder output from all 47 species
GSVIVT01024295001	ATPAL1, PAL1	Secondary metabolism.phenolics.p-coumaroyl-CoA...	0.04	OrthoFinder output from all 47 species
GSVIVT01024299001	ATPAL1, PAL1	Secondary metabolism.phenolics.p-coumaroyl-CoA...	0.03	OrthoFinder output from all 47 species
GSVIVT01024315001	ATPAL1, PAL1	Secondary metabolism.phenolics.p-coumaroyl-CoA...	0.04	OrthoFinder output from all 47 species
GSVIVT01025703001	ATPAL2, PAL2	Secondary metabolism.phenolics.p-coumaroyl-CoA...	0.03	OrthoFinder output from all 47 species
Gb_01672	ATPAL2, PAL2	phenylalanine ammonia lyase (PAL)	0.04	OrthoFinder output from all 47 species
Gb_16672	ATPAL1, PAL1	phenylalanine ammonia lyase (PAL)	0.03	OrthoFinder output from all 47 species
Gb_21115	PAL4	phenylalanine ammonia lyase (PAL)	0.03	OrthoFinder output from all 47 species
Gb_31408	PAL4	phenylalanine ammonia lyase (PAL)	0.02	OrthoFinder output from all 47 species
Gb_41796	PAL4	phenylalanine ammonia lyase (PAL)	0.04	OrthoFinder output from all 47 species
LOC_Os02g41630.2	ATPAL1, PAL1,...	phenylalanine ammonia lyase (PAL)	0.03	OrthoFinder output from all 47 species
LOC_Os02g41650.3	ATPAL1, PAL1,...	phenylalanine ammonia lyase (PAL)	0.04	OrthoFinder output from all 47 species
LOC_Os02g41670.1	ATPAL1, PAL1,...	phenylalanine ammonia lyase (PAL)	0.03	OrthoFinder output from all 47 species
LOC_Os02g41680.1	ATPAL1, PAL1,...	phenylalanine ammonia lyase (PAL)	0.04	OrthoFinder output from all 47 species
LOC_Os04g43760.1	ATPAL1, PAL1,...	phenylalanine ammonia lyase (PAL)	0.03	OrthoFinder output from all 47 species
LOC_Os04g43800.1	ATPAL1, PAL1,...	phenylalanine ammonia lyase (PAL)	0.04	OrthoFinder output from all 47 species
LOC_Os05g35290.1	ATPAL1, PAL1,...	phenylalanine ammonia lyase (PAL)	0.03	OrthoFinder output from all 47 species
Len_g50108	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.04	OrthoFinder output from all 47 species
Len_g54933	ATPAL1, PAL1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Len_g59256	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g14564	ATPAL1, PAL1	EC_4.3 carbon-nitrogen lyase & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g30829	PAL4	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_189052g0010	ATPAL1, PAL1	Phenylalanine ammonia-lyase OS=Pinus taeda...	0.03	OrthoFinder output from all 47 species
MA_44561g0010	PAL4	phenylalanine ammonia lyase (PAL)	0.03	OrthoFinder output from all 47 species
Mp3g18570.1	PAL4	Enzyme classification.EC_4 lyases.EC_4.3 carbon-nitrogen...	0.03	OrthoFinder output from all 47 species
Mp4g14110.1	ATPAL1, PAL1	phenylalanine ammonia lyase (PAL)	0.02	OrthoFinder output from all 47 species
Mp4g14140.1	ATPAL1, PAL1	phenylalanine ammonia lyase (PAL)	0.03	OrthoFinder output from all 47 species
Mp4g14160.1	ATPAL2, PAL2	phenylalanine ammonia lyase (PAL)	0.03	OrthoFinder output from all 47 species
Mp4g14170.1	PAL4	phenylalanine ammonia lyase (PAL)	0.03	OrthoFinder output from all 47 species
Msp_g35210	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g08621	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g15973	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g40427	ATPAL2, PAL2	EC_4.3 carbon-nitrogen lyase & original description: none	0.06	OrthoFinder output from all 47 species
Pnu_g16134	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.03	OrthoFinder output from all 47 species
Pp3c10_21810V3.1	PAL4, Pp3c10_21810	phenylalanine ammonia-lyase 4	0.02	OrthoFinder output from all 47 species
Pp3c21_7640V3.1	ATPAL2, PAL2, Pp3c21_7640	phenylalanine ammonia-lyase 2	0.02	OrthoFinder output from all 47 species
Pp3c24_13110V3.1	PAL4, Pp3c24_13110	phenylalanine ammonia-lyase 4	0.02	OrthoFinder output from all 47 species
Ppi_g16617	ATPAL2, PAL2	EC_4.3 carbon-nitrogen lyase & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0067.g016271	PAL4	EC_4.3 carbon-nitrogen lyase & original description: CDS=1-2382	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0091.g018764	ATPAL1, PAL1	EC_4.3 carbon-nitrogen lyase & original description: CDS=1-2271	0.03	OrthoFinder output from all 47 species
Solyc10g011920.3.1	ATPAL1, PAL1,...	Phenylalanine ammonia-lyase 1 OS=Solanum tuberosum...	0.05	OrthoFinder output from all 47 species
Solyc10g011930.1.1	ATPAL1, PAL1,...	Phenylalanine ammonia-lyase OS=Solanum lycopersicum...	0.05	OrthoFinder output from all 47 species
Solyc10g086180.2.1	ATPAL1, PAL1,...	phenylalanine ammonia lyase (PAL)	0.02	OrthoFinder output from all 47 species
Spa_g08604	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g26458	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g08349	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.05	OrthoFinder output from all 47 species
Tin_g10052	PAL4	EC_4.3 carbon-nitrogen lyase & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g14732	ATPAL1, PAL1	EC_4.3 carbon-nitrogen lyase & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e023031_P002	PAL4, Zm00001e023031	phenylalanine ammonia lyase (PAL)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010383	cell wall polysaccharide metabolic process	None	Extended
BP	GO:0010410	hemicellulose metabolic process	None	Extended
BP	GO:0010413	glucuronoxylan metabolic process	RCA	Interproscan
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0033692	cellular polysaccharide biosynthetic process	None	Extended
BP	GO:0034637	cellular carbohydrate biosynthetic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044036	cell wall macromolecule metabolic process	None	Extended
BP	GO:0044038	cell wall macromolecule biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
BP	GO:0045491	xylan metabolic process	None	Extended
BP	GO:0045492	xylan biosynthetic process	RCA	Interproscan
BP	GO:0070589	cellular component macromolecule biosynthetic process	None	Extended
BP	GO:0070592	cell wall polysaccharide biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	HCCA
BP	GO:0006576	biogenic amine metabolic process	IEP	HCCA
BP	GO:0006595	polyamine metabolic process	IEP	HCCA
BP	GO:0006598	polyamine catabolic process	IEP	HCCA
BP	GO:0006694	steroid biosynthetic process	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
MF	GO:0008171	O-methyltransferase activity	IEP	HCCA
BP	GO:0008202	steroid metabolic process	IEP	HCCA
BP	GO:0008610	lipid biosynthetic process	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
BP	GO:0009308	amine metabolic process	IEP	HCCA
BP	GO:0009310	amine catabolic process	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
BP	GO:0009611	response to wounding	IEP	HCCA
BP	GO:0009698	phenylpropanoid metabolic process	IEP	HCCA
BP	GO:0009699	phenylpropanoid biosynthetic process	IEP	HCCA
BP	GO:0009804	coumarin metabolic process	IEP	HCCA
BP	GO:0009805	coumarin biosynthetic process	IEP	HCCA
BP	GO:0009808	lignin metabolic process	IEP	HCCA
BP	GO:0009809	lignin biosynthetic process	IEP	HCCA
BP	GO:0009812	flavonoid metabolic process	IEP	HCCA
BP	GO:0009813	flavonoid biosynthetic process	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
BP	GO:0009962	regulation of flavonoid biosynthetic process	IEP	HCCA
BP	GO:0009963	positive regulation of flavonoid biosynthetic process	IEP	HCCA
BP	GO:0016125	sterol metabolic process	IEP	HCCA
BP	GO:0016126	sterol biosynthetic process	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019748	secondary metabolic process	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
MF	GO:0030744	luteolin O-methyltransferase activity	IEP	HCCA
MF	GO:0030755	quercetin 3-O-methyltransferase activity	IEP	HCCA
MF	GO:0033799	myricetin 3'-O-methyltransferase activity	IEP	HCCA
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	HCCA
BP	GO:0042402	cellular biogenic amine catabolic process	IEP	HCCA
BP	GO:0042440	pigment metabolic process	IEP	HCCA
BP	GO:0044550	secondary metabolite biosynthetic process	IEP	HCCA
BP	GO:0046148	pigment biosynthetic process	IEP	HCCA
MF	GO:0047763	caffeate O-methyltransferase activity	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0051552	flavone metabolic process	IEP	HCCA
BP	GO:0051553	flavone biosynthetic process	IEP	HCCA
BP	GO:0051554	flavonol metabolic process	IEP	HCCA
BP	GO:0051555	flavonol biosynthetic process	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:1901565	organonitrogen compound catabolic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001106	Aromatic_Lyase	54	532

External Links

No external refs found!

AT3G10340 (PAL4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation