1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT3G10230

AT3G10230 (LYC)


Aliases : LYC

Description : lycopene cyclase


Gene families : OG0004073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004073_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G10230
Cluster HCCA: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00134510 LYC,... Secondary metabolism.terpenoids.terpenoid... 0.02 OrthoFinder output from all 47 species
Adi_g078784 LYC EC_5.5 intramolecular lyase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g03737 LYC EC_5.5 intramolecular lyase & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0182.g056455 LYC EC_5.5 intramolecular lyase & original description: CDS=1-1671 0.03 OrthoFinder output from all 47 species
Cba_g55722 LYC EC_5.5 intramolecular lyase & original description: none 0.03 OrthoFinder output from all 47 species
Cre08.g358538 LYC Secondary metabolism.terpenoids.terpenoid... 0.05 OrthoFinder output from all 47 species
Pir_g13520 LYC EC_5.5 intramolecular lyase & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g14458 No alias EC_5.5 intramolecular lyase & original description: none 0.05 OrthoFinder output from all 47 species
Smo266613 LYC Secondary metabolism.terpenoids.terpenoid... 0.03 OrthoFinder output from all 47 species
Zm00001e013933_P001 LYC, Zm00001e013933 lycopene beta cyclase (LCY-b) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
CC GO:0009507 chloroplast ISM Interproscan
CC GO:0009507 chloroplast TAS Interproscan
BP GO:0016120 carotene biosynthetic process IGI Interproscan
MF GO:0045436 lycopene beta cyclase activity IGI Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000293 ferric-chelate reductase activity IEP HCCA
MF GO:0003933 GTP cyclohydrolase activity IEP HCCA
MF GO:0003935 GTP cyclohydrolase II activity IEP HCCA
MF GO:0004856 xylulokinase activity IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006771 riboflavin metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006787 porphyrin-containing compound catabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009231 riboflavin biosynthetic process IEP HCCA
CC GO:0009295 nucleoid IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009657 plastid organization IEP HCCA
BP GO:0009661 chromoplast organization IEP HCCA
BP GO:0009668 plastid membrane organization IEP HCCA
BP GO:0009704 de-etiolation IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
BP GO:0010027 thylakoid membrane organization IEP HCCA
BP GO:0010109 regulation of photosynthesis IEP HCCA
CC GO:0010287 plastoglobule IEP HCCA
BP GO:0015994 chlorophyll metabolic process IEP HCCA
BP GO:0015996 chlorophyll catabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
MF GO:0016722 oxidoreductase activity, acting on metal ions IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0019104 DNA N-glycosylase activity IEP HCCA
MF GO:0019200 carbohydrate kinase activity IEP HCCA
MF GO:0019238 cyclohydrolase activity IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033015 tetrapyrrole catabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0042548 regulation of photosynthesis, light reaction IEP HCCA
CC GO:0042644 chloroplast nucleoid IEP HCCA
CC GO:0042646 plastid nucleoid IEP HCCA
BP GO:0042726 flavin-containing compound metabolic process IEP HCCA
BP GO:0042727 flavin-containing compound biosynthetic process IEP HCCA
BP GO:0042793 plastid transcription IEP HCCA
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046149 pigment catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
BP GO:0080183 response to photooxidative stress IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!