AT3G09200

Description : Ribosomal protein L10 family protein

Gene families : OG0002053 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002053_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G09200

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00231170	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.24	OrthoFinder output from all 47 species
Adi_g013157	No alias	component *(uL10) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Adi_g017387	No alias	component *(uL10) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aev_g31921	No alias	component *(uL10) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ala_g01443	No alias	component *(uL10) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Aop_g13520	No alias	component *(uL10) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Aspi01Gene70147.t1	Aspi01Gene70147	component *(uL10) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Azfi_s0024.g020356	No alias	component *(uL10) of large ribosomal-subunit (LSU)...	0.17	OrthoFinder output from all 47 species
Cba_g05117	No alias	component *(uL10) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ceric.18G048600.1	Ceric.18G048600	component *(uL10) of large ribosomal-subunit (LSU)...	0.23	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000615.69	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.29	OrthoFinder output from all 47 species
Cre12.g520500	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.29	OrthoFinder output from all 47 species
Dac_g01446	No alias	component *(uL10) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Dcu_g00958	No alias	component *(uL10) of large ribosomal-subunit (LSU)...	0.14	OrthoFinder output from all 47 species
Dcu_g24985	No alias	component *(uL10) of large ribosomal-subunit (LSU)...	0.14	OrthoFinder output from all 47 species
GSVIVT01016313001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.1	OrthoFinder output from all 47 species
GSVIVT01032857001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.16	OrthoFinder output from all 47 species
Gb_29821	No alias	60S acidic ribosomal protein P0 OS=Glycine max...	0.05	OrthoFinder output from all 47 species
LOC_Os08g03640.1	LOC_Os08g03640	component RPP0 of LSU proteome component	0.25	OrthoFinder output from all 47 species
LOC_Os12g03880.1	LOC_Os12g03880	component RPP0 of LSU proteome component	0.2	OrthoFinder output from all 47 species
Len_g16154	No alias	component *(uL10) of large ribosomal-subunit (LSU)...	0.17	OrthoFinder output from all 47 species
Lfl_g18041	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_10433058g0020	No alias	component RPP0 of LSU proteome component	0.06	OrthoFinder output from all 47 species
Mp1g06170.1	No alias	component RPP0 of LSU proteome component	0.04	OrthoFinder output from all 47 species
Mp1g07120.1	No alias	component RPP0 of LSU proteome component	0.34	OrthoFinder output from all 47 species
Msp_g27434	No alias	component *(uL10) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Nbi_g05238	No alias	component *(uL10) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Ore_g06033	No alias	component *(uL10) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Pir_g10636	No alias	component *(uL10) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Pir_g44948	No alias	component *(uL10) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Pir_g44949	No alias	component *(uL10) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Pp3c11_3700V3.1	Pp3c11_3700	Ribosomal protein L10 family protein	0.08	OrthoFinder output from all 47 species
Pp3c1_8280V3.1	Pp3c1_8280	Ribosomal protein L10 family protein	0.19	OrthoFinder output from all 47 species
Ppi_g22136	No alias	component *(uL10) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ppi_g29825	No alias	component *(uL10) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005433	No alias	component *(cpTatC) of thylakoid membrane Tat...	0.12	OrthoFinder output from all 47 species
Sacu_v1.1_s0023.g008845	No alias	component *(uL10) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Sam_g06149	No alias	component *(uL10) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Sam_g06150	No alias	component *(uL10) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Sam_g09753	No alias	component *(uL10) of large ribosomal-subunit (LSU)...	0.12	OrthoFinder output from all 47 species
Sam_g09883	No alias	component *(uL10) of large ribosomal-subunit (LSU)...	0.27	OrthoFinder output from all 47 species
Sam_g12721	No alias	component *(uL10) of large ribosomal-subunit (LSU)...	0.15	OrthoFinder output from all 47 species
Sam_g45533	No alias	component *(uL10) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Smo149765	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	OrthoFinder output from all 47 species
Smo437282	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Solyc05g054580.3.1	Solyc05g054580	component RPP0 of LSU proteome component	0.36	OrthoFinder output from all 47 species
Spa_g56101	No alias	component *(uL10) of large ribosomal-subunit (LSU)...	0.17	OrthoFinder output from all 47 species
Tin_g14132	No alias	component *(uL10) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Zm00001e021786_P001	Zm00001e021786	component RPP0 of LSU proteome component	0.3	OrthoFinder output from all 47 species
Zm00001e029292_P001	Zm00001e029292	component RPP0 of LSU proteome component	0.25	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005507	copper ion binding	IDA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005840	ribosome	ISS	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006414	translational elongation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009409	response to cold	IEP	Interproscan
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009651	response to salt stress	IEP	Interproscan
BP	GO:0009664	plant-type cell wall organization	RCA	Interproscan
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009735	response to cytokinin	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010038	response to metal ion	None	Extended
BP	GO:0010043	response to zinc ion	IEP	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0030054	cell junction	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042545	cell wall modification	RCA	Interproscan
BP	GO:0043043	peptide biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046686	response to cadmium ion	IEP	Interproscan
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
CC	GO:0048046	apoplast	IDA	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000028	ribosomal small subunit assembly	IEP	HCCA
BP	GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000461	endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
BP	GO:0000469	cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000479	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006405	RNA export from nucleus	IEP	HCCA
BP	GO:0006407	rRNA export from nucleus	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	HCCA
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
BP	GO:0030490	maturation of SSU-rRNA	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0030686	90S preribosome	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0031123	RNA 3'-end processing	IEP	HCCA
BP	GO:0031125	rRNA 3'-end processing	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042255	ribosome assembly	IEP	HCCA
BP	GO:0042256	cytosolic ribosome assembly	IEP	HCCA
BP	GO:0043628	regulatory ncRNA 3'-end processing	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
BP	GO:0050657	nucleic acid transport	IEP	HCCA
BP	GO:0050658	RNA transport	IEP	HCCA
BP	GO:0051029	rRNA transport	IEP	HCCA
BP	GO:0051168	nuclear export	IEP	HCCA
BP	GO:0051236	establishment of RNA localization	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0070925	organelle assembly	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	IEP	HCCA
BP	GO:0097064	ncRNA export from nucleus	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
BP	GO:0140694	non-membrane-bounded organelle assembly	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001790	Ribosomal_L10P	7	107

External Links

No external refs found!

AT3G09200

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation