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  5. AT3G07810

AT3G07810


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG0000120 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G07810

Target Alias Description ECC score Gene Family Method Actions
Aev_g05983 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g16494 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g04352 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g10341 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g32654 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g34526 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.11G086800.1 Ceric.11G086800 not classified & original description: pacid=50595981... 0.03 OrthoFinder output from all 47 species
Ceric.23G034800.1 Ceric.23G034800 not classified & original description: pacid=50611547... 0.03 OrthoFinder output from all 47 species
Dcu_g02961 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g06314 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01028394001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01030040001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01037771001 No alias Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
LOC_Os07g39560.3 LOC_Os07g39560 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Lfl_g06582 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g08248 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g10776 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g20248 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g56140 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g40264 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g26586 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e011415_P001 Zm00001e011415 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e033045_P001 Zm00001e033045 Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis... 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
CC GO:0005576 extracellular region ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004382 GDP phosphatase activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0004559 alpha-mannosidase activity IEP HCCA
MF GO:0004620 phospholipase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005768 endosome IEP HCCA
CC GO:0005794 Golgi apparatus IEP HCCA
CC GO:0005802 trans-Golgi network IEP HCCA
BP GO:0006491 N-glycan processing IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0006897 endocytosis IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0009100 glycoprotein metabolic process IEP HCCA
BP GO:0009846 pollen germination IEP HCCA
BP GO:0009900 dehiscence IEP HCCA
BP GO:0009901 anther dehiscence IEP HCCA
BP GO:0010208 pollen wall assembly IEP HCCA
BP GO:0010584 pollen exine formation IEP HCCA
BP GO:0010927 cellular component assembly involved in morphogenesis IEP HCCA
CC GO:0012506 vesicle membrane IEP HCCA
CC GO:0012510 trans-Golgi network transport vesicle membrane IEP HCCA
MF GO:0015923 mannosidase activity IEP HCCA
MF GO:0016298 lipase activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
BP GO:0016926 protein desumoylation IEP HCCA
MF GO:0017110 nucleoside diphosphate phosphatase activity IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0019321 pentose metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
CC GO:0030658 transport vesicle membrane IEP HCCA
CC GO:0030659 cytoplasmic vesicle membrane IEP HCCA
CC GO:0030660 Golgi-associated vesicle membrane IEP HCCA
CC GO:0030662 coated vesicle membrane IEP HCCA
CC GO:0030665 clathrin-coated vesicle membrane IEP HCCA
CC GO:0031410 cytoplasmic vesicle IEP HCCA
CC GO:0031982 vesicle IEP HCCA
CC GO:0031984 organelle subcompartment IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0042732 D-xylose metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0045134 UDP phosphatase activity IEP HCCA
MF GO:0047714 galactolipase activity IEP HCCA
BP GO:0048868 pollen tube development IEP HCCA
BP GO:0050665 hydrogen peroxide biosynthetic process IEP HCCA
BP GO:0070070 proton-transporting V-type ATPase complex assembly IEP HCCA
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP HCCA
BP GO:0080119 ER body organization IEP HCCA
CC GO:0097708 intracellular vesicle IEP HCCA
CC GO:0098791 Golgi apparatus subcompartment IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
BP GO:1903409 reactive oxygen species biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 110 167
IPR000504 RRM_dom 8 69
No external refs found!