AT3G07250

Description : nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein

Gene families : OG0000432 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000432_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G07250

Target	Alias	Description	ECC score	Gene Family Method
Adi_g108841	No alias	mRNA endoribonuclease *(G3BP) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g117241	No alias	mRNA endoribonuclease *(G3BP) & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g02233	No alias	mRNA endoribonuclease *(G3BP) & original description: none	0.01	OrthoFinder output from all 47 species
Als_g08422	No alias	mRNA endoribonuclease *(G3BP) & original description: none	0.06	OrthoFinder output from all 47 species
Als_g37554	No alias	mRNA endoribonuclease *(G3BP) & original description: none	0.01	OrthoFinder output from all 47 species
Als_g50035	No alias	mRNA endoribonuclease *(G3BP) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene59809.t1	Aspi01Gene59809	mRNA endoribonuclease *(G3BP) & original description: none	0.01	OrthoFinder output from all 47 species
Cba_g62918	No alias	mRNA endoribonuclease *(G3BP) & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g05349	No alias	mRNA endoribonuclease *(G3BP) & original description: none	0.05	OrthoFinder output from all 47 species
Pnu_g24879	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g09035	No alias	mRNA endoribonuclease *(G3BP) & original description: none	0.01	OrthoFinder output from all 47 species
Zm00001e035497_P008	Zm00001e035497	mRNA endoribonuclease (G3BP)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006913	nucleocytoplasmic transport	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0030054	cell junction	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051169	nuclear transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR012463	Ninja_motif	12	41
IPR000504	RRM_dom	552	610
IPR000504	RRM_dom	1078	1134
IPR000504	RRM_dom	747	800
IPR000504	RRM_dom	1199	1254
IPR032308	TDBD	219	280
IPR002075	NTF2_dom	947	1060
IPR002075	NTF2_dom	281	394

External Links

No external refs found!