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  5. AT3G06990

AT3G06990


Description : Cysteine/Histidine-rich C1 domain family protein


Gene families : OG0004669 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004669_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G06990
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
AT1G69150 No alias Cysteine/Histidine-rich C1 domain family protein 0.08 OrthoFinder output from all 47 species
AT4G01925 No alias Cysteine/Histidine-rich C1 domain family protein 0.03 OrthoFinder output from all 47 species
AT4G02190 No alias Cysteine/Histidine-rich C1 domain family protein 0.08 OrthoFinder output from all 47 species
AT4G11390 No alias Cysteine/Histidine-rich C1 domain family protein 0.05 OrthoFinder output from all 47 species
AT4G13992 No alias Cysteine/Histidine-rich C1 domain family protein 0.06 OrthoFinder output from all 47 species
AT4G14980 No alias Cysteine/Histidine-rich C1 domain family protein 0.03 OrthoFinder output from all 47 species
AT4G16015 No alias Cysteine/Histidine-rich C1 domain family protein 0.04 OrthoFinder output from all 47 species
AT5G16430 No alias Cysteine/Histidine-rich C1 domain family protein 0.03 OrthoFinder output from all 47 species
AT5G26190 No alias Cysteine/Histidine-rich C1 domain family protein 0.05 OrthoFinder output from all 47 species
AT5G29624 No alias Cysteine/Histidine-rich C1 domain family protein 0.01 OrthoFinder output from all 47 species
AT5G37620 No alias Cysteine/Histidine-rich C1 domain family protein 0.05 OrthoFinder output from all 47 species
AT5G39471 No alias Cysteine/Histidine-rich C1 domain family protein 0.05 OrthoFinder output from all 47 species
AT5G54040 No alias Cysteine/Histidine-rich C1 domain family protein 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
BP GO:0005513 detection of calcium ion IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006826 iron ion transport IEP HCCA
BP GO:0007154 cell communication IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0009267 cellular response to starvation IEP HCCA
BP GO:0009593 detection of chemical stimulus IEP HCCA
BP GO:0009612 response to mechanical stimulus IEP HCCA
BP GO:0009749 response to glucose IEP HCCA
BP GO:0009991 response to extracellular stimulus IEP HCCA
BP GO:0010035 response to inorganic substance IEP HCCA
BP GO:0010043 response to zinc ion IEP HCCA
BP GO:0010106 cellular response to iron ion starvation IEP HCCA
BP GO:0010167 response to nitrate IEP HCCA
BP GO:0010306 rhamnogalacturonan II biosynthetic process IEP HCCA
BP GO:0010393 galacturonan metabolic process IEP HCCA
BP GO:0010396 rhamnogalacturonan II metabolic process IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
BP GO:0015706 nitrate transmembrane transport IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
BP GO:0019722 calcium-mediated signaling IEP HCCA
BP GO:0019932 second-messenger-mediated signaling IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0030048 actin filament-based movement IEP HCCA
MF GO:0030551 cyclic nucleotide binding IEP HCCA
BP GO:0031667 response to nutrient levels IEP HCCA
BP GO:0031668 cellular response to extracellular stimulus IEP HCCA
BP GO:0031669 cellular response to nutrient levels IEP HCCA
MF GO:0035252 UDP-xylosyltransferase activity IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
MF GO:0042285 xylosyltransferase activity IEP HCCA
BP GO:0042594 response to starvation IEP HCCA
BP GO:0045488 pectin metabolic process IEP HCCA
BP GO:0045489 pectin biosynthetic process IEP HCCA
BP GO:0051592 response to calcium ion IEP HCCA
BP GO:0051645 Golgi localization IEP HCCA
BP GO:0051646 mitochondrion localization IEP HCCA
BP GO:0052325 cell wall pectin biosynthetic process IEP HCCA
BP GO:0052546 cell wall pectin metabolic process IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0060151 peroxisome localization IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
BP GO:0071496 cellular response to external stimulus IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098661 inorganic anion transmembrane transport IEP HCCA
BP GO:1902025 nitrate import IEP HCCA
InterPro domains Description Start Stop
IPR004146 DC1 418 465
IPR004146 DC1 251 301
IPR004146 DC1 71 118
No external refs found!