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  5. AT3G06430

AT3G06430 (EMB2750)


Aliases : EMB2750

Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0002119 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002119_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G06430

Target Alias Description ECC score Gene Family Method Actions
AT3G53170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 OrthoFinder output from all 47 species
Als_g33753 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene36337.t1 EMB2453, ATPPR5,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0174.g055903 EMB2453, ATPPR5 not classified & original description: CDS=133-1563 0.05 OrthoFinder output from all 47 species
GSVIVT01017677001 EMB2750 Pentatricopeptide repeat-containing protein At3g06430,... 0.06 OrthoFinder output from all 47 species
GSVIVT01032162001 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.04 OrthoFinder output from all 47 species
Gb_00230 No alias Pentatricopeptide repeat-containing protein At3g06430,... 0.02 OrthoFinder output from all 47 species
Gb_36199 EMB2453, ATPPR5 Pentatricopeptide repeat-containing protein At4g39620,... 0.05 OrthoFinder output from all 47 species
Gb_38049 No alias Pentatricopeptide repeat-containing protein At3g53170... 0.04 OrthoFinder output from all 47 species
LOC_Os02g51480.1 EMB2453, ATPPR5,... Pentatricopeptide repeat-containing protein PPR5... 0.04 OrthoFinder output from all 47 species
LOC_Os03g02430.1 LOC_Os03g02430 Pentatricopeptide repeat-containing protein At3g53170... 0.07 OrthoFinder output from all 47 species
LOC_Os03g19650.3 EMB2750, LOC_Os03g19650 Pentatricopeptide repeat-containing protein At3g06430,... 0.04 OrthoFinder output from all 47 species
LOC_Os06g07550.1 LOC_Os06g07550 Pentatricopeptide repeat-containing protein At5g48730,... 0.12 OrthoFinder output from all 47 species
Msp_g27398 EMB2453, ATPPR5 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g07398 EMB2453, ATPPR5 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g16720 EMB2453, ATPPR5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g30371 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0066.g016075 No alias not classified & original description: CDS=33-1412 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0080.g017959 EMB2453, ATPPR5 not classified & original description: CDS=1-1101 0.02 OrthoFinder output from all 47 species
Solyc01g006500.4.1 Solyc01g006500 Pentatricopeptide repeat-containing protein At5g48730,... 0.04 OrthoFinder output from all 47 species
Solyc04g054270.4.1 EMB2453, ATPPR5,... Pentatricopeptide repeat-containing protein PPR5... 0.04 OrthoFinder output from all 47 species
Solyc08g045780.4.1 Solyc08g045780 Pentatricopeptide repeat-containing protein At3g53170... 0.03 OrthoFinder output from all 47 species
Solyc12g098990.2.1 EMB2750, Solyc12g098990 Pentatricopeptide repeat-containing protein At3g06430,... 0.04 OrthoFinder output from all 47 species
Spa_g12418 EMB2453, ATPPR5 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e023883_P001 EMB2453, ATPPR5,... Pentatricopeptide repeat-containing protein PPR5,... 0.03 OrthoFinder output from all 47 species
Zm00001e031052_P001 Zm00001e031052 Pentatricopeptide repeat-containing protein At5g48730,... 0.05 OrthoFinder output from all 47 species
Zm00001e032726_P001 EMB2750, Zm00001e032726 Pentatricopeptide repeat-containing protein At3g06430,... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
CC GO:0009507 chloroplast IDA Interproscan
BP GO:0009553 embryo sac development IMP Interproscan
BP GO:0009555 pollen development IMP Interproscan
BP GO:0009793 embryo development ending in seed dormancy NAS Interproscan
MF GO:0019843 rRNA binding IDA Interproscan
BP GO:0048868 pollen tube development IMP Interproscan
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Type GO Term Name Evidence Source
BP GO:0000038 very long-chain fatty acid metabolic process IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
CC GO:0009527 plastid outer membrane IEP HCCA
CC GO:0009535 chloroplast thylakoid membrane IEP HCCA
CC GO:0009707 chloroplast outer membrane IEP HCCA
BP GO:0009765 photosynthesis, light harvesting IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
CC GO:0031969 chloroplast membrane IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
CC GO:0034357 photosynthetic membrane IEP HCCA
CC GO:0042170 plastid membrane IEP HCCA
BP GO:0042335 cuticle development IEP HCCA
CC GO:0042651 thylakoid membrane IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
MF GO:0042803 protein homodimerization activity IEP HCCA
BP GO:0045036 protein targeting to chloroplast IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
CC GO:0055035 plastid thylakoid membrane IEP HCCA
BP GO:0072596 establishment of protein localization to chloroplast IEP HCCA
BP GO:0072598 protein localization to chloroplast IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 303 330
IPR002885 Pentatricopeptide_repeat 126 155
IPR002885 Pentatricopeptide_repeat 405 451
IPR002885 Pentatricopeptide_repeat 228 275
IPR002885 Pentatricopeptide_repeat 157 206
IPR002885 Pentatricopeptide_repeat 336 383
No external refs found!