AT3G06410

Description : Zinc finger C-x8-C-x5-C-x3-H type family protein

Gene families : OG0000297 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000297_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G06410

Target	Alias	Description	ECC score	Gene Family Method
AT2G47850	No alias	Zinc finger C-x8-C-x5-C-x3-H type family protein	0.04	OrthoFinder output from all 47 species
Aev_g10552	ZFN1	regulatory protein of RNA homeostasis & original...	0.02	OrthoFinder output from all 47 species
Aev_g11036	ZFN1	regulatory protein of RNA homeostasis & original...	0.04	OrthoFinder output from all 47 species
Ceric.25G067600.1	ZFN2, Ceric.25G067600	regulatory protein of RNA homeostasis & original...	0.04	OrthoFinder output from all 47 species
Ceric.34G043900.1	ZFN1, Ceric.34G043900	regulatory protein of RNA homeostasis & original...	0.03	OrthoFinder output from all 47 species
Ehy_g14501	ZFN1	regulatory protein of RNA homeostasis & original...	0.03	OrthoFinder output from all 47 species
LOC_Os12g18120.1	LOC_Os12g18120	C3H zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
Len_g27838	No alias	regulatory protein of RNA homeostasis & original...	0.03	OrthoFinder output from all 47 species
MA_22572g0020	ZFN1	C3H zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Msp_g06264	No alias	regulatory protein of RNA homeostasis & original...	0.02	OrthoFinder output from all 47 species
Nbi_g17792	ZFN1	regulatory protein of RNA homeostasis & original...	0.02	OrthoFinder output from all 47 species
Ore_g07740	No alias	regulatory protein of RNA homeostasis & original...	0.03	OrthoFinder output from all 47 species
Ore_g44844	ZFN1	regulatory protein of RNA homeostasis & original...	0.02	OrthoFinder output from all 47 species
Pp3c26_12270V3.1	ZFN1, Pp3c26_12270	Zinc finger C-x8-C-x5-C-x3-H type family protein	0.02	OrthoFinder output from all 47 species
Sam_g16433	No alias	regulatory protein of RNA homeostasis & original...	0.03	OrthoFinder output from all 47 species
Solyc06g054620.4.1	Solyc06g054620	C3H zinc finger transcription factor	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004022	alcohol dehydrogenase (NAD+) activity	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
BP	GO:0006560	proline metabolic process	IEP	HCCA
BP	GO:0006561	proline biosynthetic process	IEP	HCCA
BP	GO:0006714	sesquiterpenoid metabolic process	IEP	HCCA
BP	GO:0006720	isoprenoid metabolic process	IEP	HCCA
BP	GO:0006721	terpenoid metabolic process	IEP	HCCA
BP	GO:0008299	isoprenoid biosynthetic process	IEP	HCCA
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	HCCA
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	HCCA
BP	GO:0009408	response to heat	IEP	HCCA
BP	GO:0009687	abscisic acid metabolic process	IEP	HCCA
BP	GO:0009688	abscisic acid biosynthetic process	IEP	HCCA
BP	GO:0009746	response to hexose	IEP	HCCA
BP	GO:0009750	response to fructose	IEP	HCCA
BP	GO:0009756	carbohydrate mediated signaling	IEP	HCCA
BP	GO:0010115	regulation of abscisic acid biosynthetic process	IEP	HCCA
BP	GO:0010182	sugar mediated signaling pathway	IEP	HCCA
MF	GO:0010301	xanthoxin dehydrogenase activity	IEP	HCCA
BP	GO:0010565	regulation of cellular ketone metabolic process	IEP	HCCA
BP	GO:0016106	sesquiterpenoid biosynthetic process	IEP	HCCA
BP	GO:0016114	terpenoid biosynthetic process	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0018455	alcohol dehydrogenase [NAD(P)+] activity	IEP	HCCA
BP	GO:0019216	regulation of lipid metabolic process	IEP	HCCA
BP	GO:0019747	regulation of isoprenoid metabolic process	IEP	HCCA
BP	GO:0034284	response to monosaccharide	IEP	HCCA
BP	GO:0043288	apocarotenoid metabolic process	IEP	HCCA
BP	GO:0043289	apocarotenoid biosynthetic process	IEP	HCCA
BP	GO:0043455	regulation of secondary metabolic process	IEP	HCCA
BP	GO:0046165	alcohol biosynthetic process	IEP	HCCA
BP	GO:0046890	regulation of lipid biosynthetic process	IEP	HCCA
BP	GO:0062012	regulation of small molecule metabolic process	IEP	HCCA
BP	GO:0120254	olefinic compound metabolic process	IEP	HCCA
BP	GO:0120255	olefinic compound biosynthetic process	IEP	HCCA
BP	GO:1902644	tertiary alcohol metabolic process	IEP	HCCA
BP	GO:1902645	tertiary alcohol biosynthetic process	IEP	HCCA
BP	GO:1902930	regulation of alcohol biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000571	Znf_CCCH	102	127
IPR000571	Znf_CCCH	309	333
IPR000571	Znf_CCCH	56	81
IPR000571	Znf_CCCH	150	174
IPR000571	Znf_CCCH	355	379

External Links

No external refs found!

AT3G06410

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation