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Description : CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf18 (InterPro:IPR013169); Has 292 Blast hits to 292 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 118; Fungi - 83; Plants - 38; Viruses - 11; Other Eukaryotes - 42 (source: NCBI BLink).
Gene families : OG0006375 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006375_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AT3G05070 | |
| Cluster | HCCA: Cluster_5 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Azfi_s0455.g071323 | No alias | component *(CWF18) of MAC spliceosome-associated complex... | 0.03 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00021589.6 | No alias | No description available | 0.03 | OrthoFinder output from all 47 species | |
| Cre12.g518300 | No alias | No description available | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | ND | Interproscan |
| CC | GO:0005634 | nucleus | ISM | Interproscan |
| BP | GO:0008150 | biological_process | ND | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000428 | DNA-directed RNA polymerase complex | IEP | HCCA |
| MF | GO:0003735 | structural constituent of ribosome | IEP | HCCA |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
| MF | GO:0005198 | structural molecule activity | IEP | HCCA |
| CC | GO:0005665 | RNA polymerase II, core complex | IEP | HCCA |
| CC | GO:0005732 | sno(s)RNA-containing ribonucleoprotein complex | IEP | HCCA |
| CC | GO:0005840 | ribosome | IEP | HCCA |
| BP | GO:0006366 | transcription by RNA polymerase II | IEP | HCCA |
| BP | GO:0006412 | translation | IEP | HCCA |
| BP | GO:0006518 | peptide metabolic process | IEP | HCCA |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0009612 | response to mechanical stimulus | IEP | HCCA |
| CC | GO:0015934 | large ribosomal subunit | IEP | HCCA |
| BP | GO:0019722 | calcium-mediated signaling | IEP | HCCA |
| BP | GO:0019932 | second-messenger-mediated signaling | IEP | HCCA |
| CC | GO:0022625 | cytosolic large ribosomal subunit | IEP | HCCA |
| BP | GO:0030048 | actin filament-based movement | IEP | HCCA |
| CC | GO:0030880 | RNA polymerase complex | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0043043 | peptide biosynthetic process | IEP | HCCA |
| BP | GO:0043603 | amide metabolic process | IEP | HCCA |
| BP | GO:0043604 | amide biosynthetic process | IEP | HCCA |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
| CC | GO:0044391 | ribosomal subunit | IEP | HCCA |
| BP | GO:0051645 | Golgi localization | IEP | HCCA |
| BP | GO:0051646 | mitochondrion localization | IEP | HCCA |
| CC | GO:0055029 | nuclear DNA-directed RNA polymerase complex | IEP | HCCA |
| BP | GO:0060151 | peroxisome localization | IEP | HCCA |
| CC | GO:0061695 | transferase complex, transferring phosphorus-containing groups | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR013169 | mRNA_splic_Cwf18-like | 7 | 127 |
| No external refs found! |