Aliases : LSH2
Description : Protein of unknown function (DUF640)
Gene families : OG0001118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001118_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AT3G04510 | |
Cluster | HCCA: Cluster_123 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00067p00052610 | LSH6,... | Protein G1-like2 OS=Oryza sativa subsp. japonica | 0.03 | OrthoFinder output from all 47 species | |
Adi_g018931 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Adi_g024284 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Als_g04816 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Als_g17249 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g21143 | LSH6 | plant-specific ALOG-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Aspi01Gene25077.t1 | LSH4, Aspi01Gene25077 | plant-specific ALOG-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Azfi_s0007.g010927 | LSH1 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0092.g043036 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Azfi_s0639.g080525 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.14G090800.1 | LSH6, Ceric.14G090800 | plant-specific ALOG-type transcription factor & original... | 0.05 | OrthoFinder output from all 47 species | |
Ceric.18G075200.1 | LSH4, Ceric.18G075200 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.29G008000.1 | LSH4, Ceric.29G008000 | plant-specific ALOG-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Ehy_g11583 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01020708001 | LSH10 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... | 0.05 | OrthoFinder output from all 47 species | |
GSVIVT01021215001 | LSH10 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01023521001 | No alias | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01024677001 | LSH6 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01027827001 | LSH10 | No description available | 0.05 | OrthoFinder output from all 47 species | |
GSVIVT01028348001 | LSH3 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... | 0.05 | OrthoFinder output from all 47 species | |
Gb_15426 | LSH4 | Protein G1-like5 OS=Oryza sativa subsp. japonica... | 0.03 | OrthoFinder output from all 47 species | |
Gb_36840 | LSH4 | Protein G1-like6 OS=Oryza sativa subsp. indica... | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os02g41460.1 | LSH4, LOC_Os02g41460 | Protein G1-like3 OS=Oryza sativa subsp. indica... | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os02g56610.1 | LSH4, LOC_Os02g56610 | Protein G1-like6 OS=Oryza sativa subsp. indica... | 0.05 | OrthoFinder output from all 47 species | |
LOC_Os06g46030.1 | LSH4, LOC_Os06g46030 | Protein G1-like2 OS=Oryza sativa subsp. indica... | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os07g04670.1 | LSH6, LOC_Os07g04670 | Protein G1 OS=Oryza sativa subsp. japonica... | 0.04 | OrthoFinder output from all 47 species | |
Len_g03152 | LSH6 | plant-specific ALOG-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Len_g03807 | LSH1 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Mp2g00330.1 | LSH4 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... | 0.02 | OrthoFinder output from all 47 species | |
Msp_g05594 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Nbi_g02008 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.06 | OrthoFinder output from all 47 species | |
Ppi_g32132 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0001.g000386 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Solyc02g069510.1.1 | LSH4, Solyc02g069510 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5... | 0.06 | OrthoFinder output from all 47 species | |
Solyc05g055020.4.1 | LSH1, Solyc05g055020 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1... | 0.03 | OrthoFinder output from all 47 species | |
Solyc09g025280.1.1 | LSH4, Solyc09g025280 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... | 0.11 | OrthoFinder output from all 47 species | |
Solyc09g090180.1.1 | LSH4, Solyc09g090180 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... | 0.05 | OrthoFinder output from all 47 species | |
Solyc10g007310.1.1 | LSH10, Solyc10g007310 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... | 0.03 | OrthoFinder output from all 47 species | |
Solyc10g008000.1.1 | LSH10, Solyc10g008000 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... | 0.03 | OrthoFinder output from all 47 species | |
Spa_g04648 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Spa_g22798 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Spa_g28138 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Tin_g06794 | LSH4 | plant-specific ALOG-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e004570_P001 | LSH4, Zm00001e004570 | Protein G1-like4 OS=Oryza sativa subsp. indica... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e012687_P001 | LSH4, Zm00001e012687 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e013711_P001 | LSH4, Zm00001e013711 | Protein G1-like2 OS=Oryza sativa subsp. indica... | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e016177_P002 | LSH4, Zm00001e016177 | Protein G1-like6 OS=Oryza sativa subsp. indica... | 0.07 | OrthoFinder output from all 47 species | |
Zm00001e023639_P001 | LSH4, Zm00001e023639 | Protein G1-like6 OS=Oryza sativa subsp. indica... | 0.1 | OrthoFinder output from all 47 species | |
Zm00001e027222_P001 | LSH6, Zm00001e027222 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e028824_P001 | LSH6, Zm00001e028824 | Protein G1-like8 OS=Oryza sativa subsp. indica... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e030343_P002 | LSH4, Zm00001e030343 | Protein G1-like2 OS=Oryza sativa subsp. indica... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e032784_P001 | LSH6, Zm00001e032784 | Protein G1 OS=Oryza sativa subsp. japonica... | 0.11 | OrthoFinder output from all 47 species | |
Zm00001e037775_P001 | LSH4, Zm00001e037775 | Protein G1-like2 OS=Oryza sativa subsp. indica... | 0.07 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0005634 | nucleus | ISM | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000060 | obsolete protein import into nucleus, translocation | IEP | HCCA |
BP | GO:0002218 | activation of innate immune response | IEP | HCCA |
BP | GO:0002253 | activation of immune response | IEP | HCCA |
BP | GO:0002684 | positive regulation of immune system process | IEP | HCCA |
BP | GO:0002833 | positive regulation of response to biotic stimulus | IEP | HCCA |
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003677 | DNA binding | IEP | HCCA |
MF | GO:0003968 | RNA-dependent RNA polymerase activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
BP | GO:0008284 | positive regulation of cell population proliferation | IEP | HCCA |
BP | GO:0009838 | abscission | IEP | HCCA |
BP | GO:0009864 | induced systemic resistance, jasmonic acid mediated signaling pathway | IEP | HCCA |
BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
BP | GO:0009891 | positive regulation of biosynthetic process | IEP | HCCA |
BP | GO:0009893 | positive regulation of metabolic process | IEP | HCCA |
BP | GO:0009944 | polarity specification of adaxial/abaxial axis | IEP | HCCA |
BP | GO:0009954 | proximal/distal pattern formation | IEP | HCCA |
BP | GO:0009962 | regulation of flavonoid biosynthetic process | IEP | HCCA |
BP | GO:0010016 | shoot system morphogenesis | IEP | HCCA |
BP | GO:0010022 | meristem determinacy | IEP | HCCA |
BP | GO:0010074 | maintenance of meristem identity | IEP | HCCA |
BP | GO:0010076 | maintenance of floral meristem identity | IEP | HCCA |
BP | GO:0010077 | maintenance of inflorescence meristem identity | IEP | HCCA |
BP | GO:0010219 | regulation of vernalization response | IEP | HCCA |
BP | GO:0010220 | positive regulation of vernalization response | IEP | HCCA |
BP | GO:0010227 | floral organ abscission | IEP | HCCA |
BP | GO:0010254 | nectary development | IEP | HCCA |
BP | GO:0010338 | leaf formation | IEP | HCCA |
BP | GO:0010434 | bract formation | IEP | HCCA |
BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0010557 | positive regulation of macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0010582 | floral meristem determinacy | IEP | HCCA |
BP | GO:0010604 | positive regulation of macromolecule metabolic process | IEP | HCCA |
BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
BP | GO:0019827 | stem cell population maintenance | IEP | HCCA |
BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
BP | GO:0031325 | positive regulation of cellular metabolic process | IEP | HCCA |
BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
BP | GO:0031328 | positive regulation of cellular biosynthetic process | IEP | HCCA |
BP | GO:0031349 | positive regulation of defense response | IEP | HCCA |
BP | GO:0031537 | regulation of anthocyanin metabolic process | IEP | HCCA |
BP | GO:0031540 | regulation of anthocyanin biosynthetic process | IEP | HCCA |
BP | GO:0032103 | positive regulation of response to external stimulus | IEP | HCCA |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
BP | GO:0035265 | organ growth | IEP | HCCA |
BP | GO:0040009 | regulation of growth rate | IEP | HCCA |
BP | GO:0040034 | regulation of development, heterochronic | IEP | HCCA |
MF | GO:0042803 | protein homodimerization activity | IEP | HCCA |
BP | GO:0045089 | positive regulation of innate immune response | IEP | HCCA |
BP | GO:0045893 | positive regulation of DNA-templated transcription | IEP | HCCA |
BP | GO:0045927 | positive regulation of growth | IEP | HCCA |
BP | GO:0045935 | positive regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0046620 | regulation of organ growth | IEP | HCCA |
BP | GO:0046622 | positive regulation of organ growth | IEP | HCCA |
MF | GO:0046982 | protein heterodimerization activity | IEP | HCCA |
BP | GO:0048438 | floral whorl development | IEP | HCCA |
BP | GO:0048439 | flower morphogenesis | IEP | HCCA |
BP | GO:0048506 | regulation of timing of meristematic phase transition | IEP | HCCA |
BP | GO:0048509 | regulation of meristem development | IEP | HCCA |
BP | GO:0048510 | regulation of timing of transition from vegetative to reproductive phase | IEP | HCCA |
BP | GO:0048518 | positive regulation of biological process | IEP | HCCA |
BP | GO:0048522 | positive regulation of cellular process | IEP | HCCA |
BP | GO:0048584 | positive regulation of response to stimulus | IEP | HCCA |
BP | GO:0048589 | developmental growth | IEP | HCCA |
BP | GO:0048639 | positive regulation of developmental growth | IEP | HCCA |
BP | GO:0048646 | anatomical structure formation involved in morphogenesis | IEP | HCCA |
BP | GO:0050778 | positive regulation of immune response | IEP | HCCA |
BP | GO:0050789 | regulation of biological process | IEP | HCCA |
BP | GO:0051094 | positive regulation of developmental process | IEP | HCCA |
BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0051173 | positive regulation of nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0051240 | positive regulation of multicellular organismal process | IEP | HCCA |
BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
BP | GO:0051254 | positive regulation of RNA metabolic process | IEP | HCCA |
BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
BP | GO:0065001 | specification of axis polarity | IEP | HCCA |
BP | GO:0065007 | biological regulation | IEP | HCCA |
BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
BP | GO:0080134 | regulation of response to stress | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
BP | GO:0098727 | maintenance of cell number | IEP | HCCA |
BP | GO:0099402 | plant organ development | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
BP | GO:1902680 | positive regulation of RNA biosynthetic process | IEP | HCCA |
BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
BP | GO:1903508 | positive regulation of nucleic acid-templated transcription | IEP | HCCA |
BP | GO:1905393 | plant organ formation | IEP | HCCA |
BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR006936 | ALOG_dom | 23 | 146 |
No external refs found! |