Gb_38922


Description : transcription factor (MADS/AGL)


Gene families : OG_01_0000011 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000011_tree ,
OG_02_0000008 (LandPlants) Phylogenetic Tree(s): OG_02_0000008_tree ,
OG_03_0000013 (SeedPlants) Phylogenetic Tree(s): OG_03_0000013_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_38922
Cluster HCCA: Cluster_330

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00198520 evm_27.TU.AmTr_v1... Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00071p00198970 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
AMTR_s00109p00015260 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
AT1G71692 XAL1, AGL12 AGAMOUS-like 12 0.02 Archaeplastida
AT3G30260 AGL79 AGAMOUS-like 79 0.02 Archaeplastida
AT4G11880 AGL14 AGAMOUS-like 14 0.03 Archaeplastida
GSVIVT01003861001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.14 Archaeplastida
GSVIVT01012110001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
GSVIVT01026207001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
LOC_Os04g23910.1 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
LOC_Os06g22760.1 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
LOC_Os12g21850.1 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
MA_951956g0010 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
MA_9841429g0010 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
Solyc04g005320.3.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e000638_P004 No alias transcription factor (MADS/AGL) 0.25 Archaeplastida
Zm00001e000846_P003 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e003667_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e005708_P002 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e006950_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e010125_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e012024_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e015447_P001 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Zm00001e015924_P003 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e019029_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e023236_P005 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e023825_P002 No alias transcription factor (MADS/AGL) 0.07 Archaeplastida
Zm00001e027034_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e031267_P003 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e034629_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e036159_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e038716_P004 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e039774_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
AMTR_s00109p00015260 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.01 LandPlants
AT3G30260 AGL79 AGAMOUS-like 79 0.02 LandPlants
AT4G11880 AGL14 AGAMOUS-like 14 0.03 LandPlants
GSVIVT01003861001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.12 LandPlants
GSVIVT01012110001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 LandPlants
GSVIVT01026207001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 LandPlants
LOC_Os04g23910.1 No alias transcription factor (MADS/AGL) 0.06 LandPlants
LOC_Os06g22760.1 No alias transcription factor (MADS/AGL) 0.01 LandPlants
LOC_Os12g21850.1 No alias transcription factor (MADS/AGL) 0.01 LandPlants
MA_951956g0010 No alias transcription factor (MADS/AGL) 0.01 LandPlants
Solyc04g005320.3.1 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Zm00001e000846_P003 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Zm00001e003667_P001 No alias transcription factor (MADS/AGL) 0.01 LandPlants
Zm00001e005708_P002 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Zm00001e006950_P001 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Zm00001e010125_P001 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Zm00001e012024_P001 No alias transcription factor (MADS/AGL) 0.03 LandPlants
Zm00001e015447_P001 No alias transcription factor (MADS/AGL) 0.05 LandPlants
Zm00001e019029_P001 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Zm00001e023236_P005 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Zm00001e027034_P001 No alias transcription factor (MADS/AGL) 0.03 LandPlants
Zm00001e031267_P003 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Zm00001e034629_P001 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Zm00001e038716_P004 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Zm00001e039774_P001 No alias transcription factor (MADS/AGL) 0.03 LandPlants
AMTR_s00109p00015260 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.01 SeedPlants
GSVIVT01012110001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 SeedPlants
GSVIVT01026207001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 SeedPlants
MA_951956g0010 No alias transcription factor (MADS/AGL) 0.01 SeedPlants
Zm00001e006950_P001 No alias transcription factor (MADS/AGL) 0.02 SeedPlants
Zm00001e027034_P001 No alias transcription factor (MADS/AGL) 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
No external refs found!