AT3G02230 (ATRGP1, RGP1)

Aliases : ATRGP1, RGP1

Description : reversibly glycosylated polypeptide 1

Gene families : OG0001238 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001238_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G02230

Target	Alias	Description	ECC score	Gene Family Method
Als_g05517	ATRGP1, RGP1	UDP-L-arabinose mutase & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g09138	ATRGP1, RGP1	UDP-L-arabinose mutase & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os03g40270.1	RGP2, ATRGP2,...	UDP-L-arabinose mutase	0.04	OrthoFinder output from all 47 species
Mp2g10800.1	ATRGP1, RGP1	UDP-L-arabinose mutase	0.03	OrthoFinder output from all 47 species
Ore_g14403	ATRGP1, RGP1	UDP-L-arabinose mutase & original description: none	0.06	OrthoFinder output from all 47 species
Ppi_g15549	ATRGP1, RGP1	UDP-L-arabinose mutase & original description: none	0.04	OrthoFinder output from all 47 species
Smo140071	ATRGP1, RGP1	Carbohydrate metabolism.nucleotide sugar...	0.02	OrthoFinder output from all 47 species
Solyc04g005340.2.1	ATRGP1, RGP1,...	UDP-L-arabinose mutase	0.02	OrthoFinder output from all 47 species
Spa_g17383	RGP3, RGP	UDP-L-arabinose mutase & original description: none	0.08	OrthoFinder output from all 47 species
Zm00001e006668_P001	Zm00001e006668	UDP-L-arabinose mutase	0.04	OrthoFinder output from all 47 species
Zm00001e012459_P003	RGP2, ATRGP2,...	UDP-L-arabinose mutase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000138	Golgi trans cisterna	IDA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005774	vacuolar membrane	IDA	Interproscan
CC	GO:0005794	Golgi apparatus	IDA	Interproscan
CC	GO:0005795	Golgi stack	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005840	ribosome	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008194	UDP-glycosyltransferase activity	None	Extended
BP	GO:0009225	nucleotide-sugar metabolic process	None	Extended
BP	GO:0009555	pollen development	IGI	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009651	response to salt stress	IEP	Interproscan
BP	GO:0009832	plant-type cell wall biogenesis	TAS	Interproscan
BP	GO:0009832	plant-type cell wall biogenesis	NAS	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016757	glycosyltransferase activity	None	Extended
MF	GO:0016758	hexosyltransferase activity	None	Extended
MF	GO:0016759	cellulose synthase activity	None	Extended
MF	GO:0016760	cellulose synthase (UDP-forming) activity	ISS	Interproscan
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016866	intramolecular transferase activity	IDA	Interproscan
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0030312	external encapsulating structure	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031984	organelle subcompartment	None	Extended
CC	GO:0031985	Golgi cisterna	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033356	UDP-L-arabinose metabolic process	IMP	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035251	UDP-glucosyltransferase activity	None	Extended
BP	GO:0042546	cell wall biogenesis	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046527	glucosyltransferase activity	None	Extended
BP	GO:0048229	gametophyte development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
MF	GO:0052691	UDP-arabinopyranose mutase activity	IDA	Interproscan
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	IMP	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0098791	Golgi apparatus subcompartment	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004127	cytidylate kinase activity	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
MF	GO:0009041	uridylate kinase activity	IEP	HCCA
BP	GO:0009123	nucleoside monophosphate metabolic process	IEP	HCCA
BP	GO:0009129	pyrimidine nucleoside monophosphate metabolic process	IEP	HCCA
BP	GO:0009161	ribonucleoside monophosphate metabolic process	IEP	HCCA
BP	GO:0009173	pyrimidine ribonucleoside monophosphate metabolic process	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
MF	GO:0016776	phosphotransferase activity, phosphate group as acceptor	IEP	HCCA
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
CC	GO:0048046	apoplast	IEP	HCCA
MF	GO:0050145	nucleoside monophosphate kinase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR037595	RGP_fam	18	352

External Links

No external refs found!

AT3G02230 (ATRGP1, RGP1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation