AT3G02080

Description : Ribosomal protein S19e family protein

Gene families : OG0000873 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000873_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G02080

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00045p00207750	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.19	OrthoFinder output from all 47 species
AMTR_s00110p00069670	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.2	OrthoFinder output from all 47 species
Adi_g107544	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Adi_g125842	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ala_g20886	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Als_g07025	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Als_g16944	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Als_g44683	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Aob_g12955	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aop_g00927	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.23	OrthoFinder output from all 47 species
Aop_g14490	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Aspi01Gene53442.t1	Aspi01Gene53442	component *(eS19) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0007.g011210	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.13	OrthoFinder output from all 47 species
Azfi_s0014.g013681	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Cba_g21371	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cba_g29626	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ceric.11G061300.1	Ceric.11G061300	component *(eS19) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ceric.24G077600.1	Ceric.24G077600	component *(eS19) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021017.6	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.12	OrthoFinder output from all 47 species
Cre02.g106600	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.28	OrthoFinder output from all 47 species
Dac_g02533	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Dac_g22936	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Dac_g28531	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Dcu_g21083	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Dcu_g29784	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Dcu_g30993	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.2	OrthoFinder output from all 47 species
Dcu_g32936	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Dde_g00231	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Dde_g03627	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ehy_g00300	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
GSVIVT01007908001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.22	OrthoFinder output from all 47 species
GSVIVT01012199001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.29	OrthoFinder output from all 47 species
Gb_40460	No alias	component RPS19 of SSU proteome	0.17	OrthoFinder output from all 47 species
LOC_Os03g31090.1	LOC_Os03g31090	component RPS19 of SSU proteome	0.32	OrthoFinder output from all 47 species
Lfl_g31872	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
MA_10427917g0010	No alias	component RPS19 of SSU proteome	0.18	OrthoFinder output from all 47 species
MA_7685779g0010	No alias	component RPS19 of SSU proteome	0.06	OrthoFinder output from all 47 species
MA_9301411g0010	No alias	component RPS19 of SSU proteome	0.15	OrthoFinder output from all 47 species
Mp1g27380.1	No alias	component RPS19 of SSU proteome	0.23	OrthoFinder output from all 47 species
Msp_g22057	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Msp_g43925	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.13	OrthoFinder output from all 47 species
Nbi_g03378	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Nbi_g27238	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Ore_g34855	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Pir_g00273	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Pir_g62458	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Pp3c14_19640V3.1	Pp3c14_19640	Ribosomal protein S19e family protein	0.11	OrthoFinder output from all 47 species
Pp3c17_15200V3.1	Pp3c17_15200	Ribosomal protein S19e family protein	0.12	OrthoFinder output from all 47 species
Pp3c1_28780V3.1	Pp3c1_28780	Ribosomal protein S19e family protein	0.17	OrthoFinder output from all 47 species
Pp3c27_2780V3.1	Pp3c27_2780	Ribosomal protein S19e family protein	0.02	OrthoFinder output from all 47 species
Pp3c2_10060V3.1	Pp3c2_10060	Ribosomal protein S19e family protein	0.15	OrthoFinder output from all 47 species
Ppi_g00396	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Ppi_g02540	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g10706	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ppi_g26502	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g28533	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0100.g019638	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Sam_g12907	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.11	OrthoFinder output from all 47 species
Sam_g22603	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.2	OrthoFinder output from all 47 species
Sam_g22812	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sam_g27047	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Sam_g30614	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Sam_g31814	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.21	OrthoFinder output from all 47 species
Sam_g41631	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Sam_g42204	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Sam_g46027	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Sam_g47692	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Smo153225	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.16	OrthoFinder output from all 47 species
Solyc03g115360.3.1	Solyc03g115360	component RPS19 of SSU proteome	0.37	OrthoFinder output from all 47 species
Solyc12g039120.2.1	Solyc12g039120	component RPS19 of SSU proteome	0.43	OrthoFinder output from all 47 species
Spa_g02912	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.15	OrthoFinder output from all 47 species
Spa_g11663	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.24	OrthoFinder output from all 47 species
Spa_g41565	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.16	OrthoFinder output from all 47 species
Spa_g43576	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.09	OrthoFinder output from all 47 species
Tin_g14125	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.15	OrthoFinder output from all 47 species
Tin_g40581	No alias	component *(eS19) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Zm00001e002011_P001	Zm00001e002011	component RPS19 of SSU proteome	0.31	OrthoFinder output from all 47 species
Zm00001e038053_P003	Zm00001e038053	component RPS19 of SSU proteome	0.34	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005840	ribosome	ISS	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015935	small ribosomal subunit	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0022627	cytosolic small ribosomal subunit	IDA	Interproscan
CC	GO:0030054	cell junction	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000028	ribosomal small subunit assembly	IEP	HCCA
BP	GO:0001510	RNA methylation	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0009735	response to cytokinin	IEP	HCCA
BP	GO:0010033	response to organic substance	IEP	HCCA
BP	GO:0010043	response to zinc ion	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
CC	GO:0022625	cytosolic large ribosomal subunit	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0030686	90S preribosome	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
CC	GO:0032040	small-subunit processome	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042274	ribosomal small subunit biogenesis	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001266	Ribosomal_S19e	6	140

External Links

No external refs found!

AT3G02080

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation