AT2G47640

Description : Small nuclear ribonucleoprotein family protein

Gene families : OG0003421 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003421_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G47640

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00057p00221440	evm_27.TU.AmTr_v1...	RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm...	0.05	OrthoFinder output from all 47 species
Aob_g27074	No alias	component *(Sm-D2) of U1/U2/U4/U5-associated Sm...	0.03	OrthoFinder output from all 47 species
Cba_g54636	No alias	component *(Sm-D2) of U1/U2/U4/U5-associated Sm...	0.03	OrthoFinder output from all 47 species
Ceric.04G039600.1	Ceric.04G039600	component *(Sm-D2) of U1/U2/U4/U5-associated Sm...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021133.4	No alias	RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm...	0.02	OrthoFinder output from all 47 species
Cre10.g453450	No alias	RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm...	0.04	OrthoFinder output from all 47 species
GSVIVT01011627001	No alias	RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm...	0.05	OrthoFinder output from all 47 species
Gb_19475	No alias	component Sm-D2 of U1/U2/U4/U5-associated Sm accessory...	0.03	OrthoFinder output from all 47 species
LOC_Os05g24970.1	LOC_Os05g24970	component Sm-D2 of U1/U2/U4/U5-associated Sm accessory...	0.03	OrthoFinder output from all 47 species
Pp3c10_17640V3.1	Pp3c10_17640	Small nuclear ribonucleoprotein family protein	0.01	OrthoFinder output from all 47 species
Pp3c12_17690V3.1	Pp3c12_17690	Small nuclear ribonucleoprotein family protein	0.02	OrthoFinder output from all 47 species
Solyc09g075130.3.1	Solyc09g075130	component Sm-D2 of U1/U2/U4/U5-associated Sm accessory...	0.04	OrthoFinder output from all 47 species
Spa_g22292	No alias	component *(Sm-D2) of U1/U2/U4/U5-associated Sm...	0.02	OrthoFinder output from all 47 species
Tin_g15303	No alias	component *(Sm-D2) of U1/U2/U4/U5-associated Sm...	0.03	OrthoFinder output from all 47 species
Zm00001e007570_P002	Zm00001e007570	component Sm-D2 of U1/U2/U4/U5-associated Sm accessory...	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	RCA	Interproscan
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005730	nucleolus	IDA	Interproscan
CC	GO:0005732	sno(s)RNA-containing ribonucleoprotein complex	ISS	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0032259	methylation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001163	LSM_dom_euk/arc	30	104

External Links

No external refs found!

AT2G47640

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation