AT2G47620 (SWI3A, CHB1, ATSWI3A)

Aliases : SWI3A, CHB1, ATSWI3A

Description : SWITCH/sucrose nonfermenting 3A

Gene families : OG0000817 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000817_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G47620
Cluster	HCCA: Cluster_152

Target	Alias	Description	ECC score	Gene Family Method
Ala_g02056	SWI3A, CHB1, ATSWI3A	SMARCC component *(SWI3) of chromatin remodeling complex...	0.02	OrthoFinder output from all 47 species
Cba_g15169	CHB3, ATSWI3D	SMARCC component *(SWI3) of chromatin remodeling complex...	0.02	OrthoFinder output from all 47 species
Dac_g10520	CHB3, ATSWI3D	SMARCC component *(SWI3) of chromatin remodeling complex...	0.02	OrthoFinder output from all 47 species
Sam_g52721	No alias	SMARCC component *(SWI3) of chromatin remodeling complex...	0.02	OrthoFinder output from all 47 species
Spa_g15980	SWI3A, CHB1, ATSWI3A	SMARCC component *(SWI3) of chromatin remodeling complex...	0.02	OrthoFinder output from all 47 species
Zm00001e005514_P001	CHB3, ATSWI3D,...	component BAF255/170 of chromatin remodeling complex	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009560	embryo sac egg cell differentiation	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
CC	GO:0016514	SWI/SNF complex	ISS	Interproscan
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0040029	epigenetic regulation of gene expression	RCA	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0070603	SWI/SNF superfamily-type complex	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1904949	ATPase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000156	phosphorelay response regulator activity	IEP	HCCA
CC	GO:0000815	ESCRT III complex	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0004565	beta-galactosidase activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0004707	MAP kinase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005654	nucleoplasm	IEP	HCCA
CC	GO:0005677	chromatin silencing complex	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	HCCA
BP	GO:0006465	signal peptide processing	IEP	HCCA
BP	GO:0006482	protein demethylation	IEP	HCCA
BP	GO:0006952	defense response	IEP	HCCA
BP	GO:0006955	immune response	IEP	HCCA
BP	GO:0006986	response to unfolded protein	IEP	HCCA
BP	GO:0006990	positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response	IEP	HCCA
BP	GO:0007623	circadian rhythm	IEP	HCCA
BP	GO:0008214	protein dealkylation	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
CC	GO:0009528	plastid inner membrane	IEP	HCCA
BP	GO:0009593	detection of chemical stimulus	IEP	HCCA
BP	GO:0009607	response to biotic stimulus	IEP	HCCA
BP	GO:0009608	response to symbiont	IEP	HCCA
BP	GO:0009610	response to symbiotic fungus	IEP	HCCA
BP	GO:0009627	systemic acquired resistance	IEP	HCCA
BP	GO:0009696	salicylic acid metabolic process	IEP	HCCA
BP	GO:0009697	salicylic acid biosynthetic process	IEP	HCCA
BP	GO:0009720	detection of hormone stimulus	IEP	HCCA
BP	GO:0009726	detection of endogenous stimulus	IEP	HCCA
BP	GO:0009729	detection of brassinosteroid stimulus	IEP	HCCA
BP	GO:0009742	brassinosteroid mediated signaling pathway	IEP	HCCA
BP	GO:0009791	post-embryonic development	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0009900	dehiscence	IEP	HCCA
BP	GO:0009901	anther dehiscence	IEP	HCCA
BP	GO:0010020	chloroplast fission	IEP	HCCA
BP	GO:0010038	response to metal ion	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
MF	GO:0015925	galactosidase activity	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016485	protein processing	IEP	HCCA
BP	GO:0016577	histone demethylation	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
BP	GO:0018958	phenol-containing compound metabolic process	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
BP	GO:0030968	endoplasmic reticulum unfolded protein response	IEP	HCCA
BP	GO:0031047	RNA-mediated gene silencing	IEP	HCCA
BP	GO:0031056	regulation of histone modification	IEP	HCCA
BP	GO:0031058	positive regulation of histone modification	IEP	HCCA
BP	GO:0031060	regulation of histone methylation	IEP	HCCA
BP	GO:0031062	positive regulation of histone methylation	IEP	HCCA
BP	GO:0031348	negative regulation of defense response	IEP	HCCA
BP	GO:0031401	positive regulation of protein modification process	IEP	HCCA
MF	GO:0031490	chromatin DNA binding	IEP	HCCA
CC	GO:0031519	PcG protein complex	IEP	HCCA
BP	GO:0032386	regulation of intracellular transport	IEP	HCCA
BP	GO:0032388	positive regulation of intracellular transport	IEP	HCCA
MF	GO:0032451	demethylase activity	IEP	HCCA
MF	GO:0032452	histone demethylase activity	IEP	HCCA
MF	GO:0032454	histone H3K9 demethylase activity	IEP	HCCA
BP	GO:0032776	DNA methylation on cytosine	IEP	HCCA
BP	GO:0032922	circadian regulation of gene expression	IEP	HCCA
BP	GO:0033157	regulation of intracellular protein transport	IEP	HCCA
BP	GO:0033169	histone H3-K9 demethylation	IEP	HCCA
BP	GO:0034976	response to endoplasmic reticulum stress	IEP	HCCA
MF	GO:0035064	methylated histone binding	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
CC	GO:0036452	ESCRT complex	IEP	HCCA
MF	GO:0042393	histone binding	IEP	HCCA
BP	GO:0042537	benzene-containing compound metabolic process	IEP	HCCA
BP	GO:0042752	regulation of circadian rhythm	IEP	HCCA
BP	GO:0043207	response to external biotic stimulus	IEP	HCCA
BP	GO:0043401	steroid hormone mediated signaling pathway	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043572	plastid fission	IEP	HCCA
MF	GO:0043621	protein self-association	IEP	HCCA
BP	GO:0044419	biological process involved in interspecies interaction between organisms	IEP	HCCA
BP	GO:0045087	innate immune response	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	IEP	HCCA
BP	GO:0046189	phenol-containing compound biosynthetic process	IEP	HCCA
BP	GO:0046686	response to cadmium ion	IEP	HCCA
BP	GO:0046822	regulation of nucleocytoplasmic transport	IEP	HCCA
BP	GO:0046824	positive regulation of nucleocytoplasmic transport	IEP	HCCA
BP	GO:0046825	regulation of protein export from nucleus	IEP	HCCA
BP	GO:0046827	positive regulation of protein export from nucleus	IEP	HCCA
CC	GO:0048471	perinuclear region of cytoplasm	IEP	HCCA
BP	GO:0048511	rhythmic process	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0048571	long-day photoperiodism	IEP	HCCA
BP	GO:0048574	long-day photoperiodism, flowering	IEP	HCCA
BP	GO:0048583	regulation of response to stimulus	IEP	HCCA
BP	GO:0048587	regulation of short-day photoperiodism, flowering	IEP	HCCA
BP	GO:0051050	positive regulation of transport	IEP	HCCA
BP	GO:0051222	positive regulation of protein transport	IEP	HCCA
BP	GO:0051223	regulation of protein transport	IEP	HCCA
BP	GO:0051247	positive regulation of protein metabolic process	IEP	HCCA
BP	GO:0051570	regulation of histone H3-K9 methylation	IEP	HCCA
BP	GO:0051574	positive regulation of histone H3-K9 methylation	IEP	HCCA
BP	GO:0051707	response to other organism	IEP	HCCA
BP	GO:0070076	histone lysine demethylation	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0070201	regulation of establishment of protein localization	IEP	HCCA
BP	GO:0070988	demethylation	IEP	HCCA
BP	GO:0080188	gene silencing by RNA-directed DNA methylation	IEP	HCCA
BP	GO:0090316	positive regulation of intracellular protein transport	IEP	HCCA
BP	GO:0098542	defense response to other organism	IEP	HCCA
MF	GO:0140030	modification-dependent protein binding	IEP	HCCA
MF	GO:0140034	methylation-dependent protein binding	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
MF	GO:0140457	protein demethylase activity	IEP	HCCA
BP	GO:1900109	regulation of histone H3-K9 dimethylation	IEP	HCCA
BP	GO:1900111	positive regulation of histone H3-K9 dimethylation	IEP	HCCA
BP	GO:1901522	positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus	IEP	HCCA
BP	GO:1903829	positive regulation of protein localization	IEP	HCCA
BP	GO:1904951	positive regulation of establishment of protein localization	IEP	HCCA
BP	GO:2000028	regulation of photoperiodism, flowering	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001005	SANT/Myb	228	267
IPR032451	SMARCC_C	423	493
IPR007526	SWIRM	16	101

External Links

No external refs found!

AT2G47620 (SWI3A, CHB1, ATSWI3A)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation