Gb_38871

Description : subfamily ABCC transporter

Gene families : OG_01_0000058 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000058_tree ,
OG_02_0000437 (LandPlants) Phylogenetic Tree(s): OG_02_0000437_tree ,
OG_03_0000372 (SeedPlants) Phylogenetic Tree(s): OG_03_0000372_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Gb_38871
Cluster	HCCA: Cluster_80

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00092p00037330	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.04	Archaeplastida
AMTR_s00507p00011670	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
Cpa\|evm.model.tig00000718.2	No alias	ABC transporter C family member 2 OS=Arabidopsis thaliana	0.01	Archaeplastida
Cpa\|evm.model.tig00000718.3	No alias	ABC transporter C family member 6 OS=Arabidopsis thaliana	0.01	Archaeplastida
GSVIVT01019475001	No alias	Solute transport.primary active transport.ABC...	0.05	Archaeplastida
GSVIVT01028722001	No alias	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
LOC_Os03g04920.1	No alias	subfamily ABCC transporter	0.03	Archaeplastida
Mp4g11950.1	No alias	subfamily ABCC transporter	0.01	Archaeplastida
Mp5g13230.1	No alias	subfamily ABCC transporter	0.02	Archaeplastida
Mp7g13400.1	No alias	subfamily ABCC transporter	0.04	Archaeplastida
Mp7g13860.1	No alias	subfamily ABCC transporter	0.01	Archaeplastida
Pp3c10_6490V3.1	No alias	multidrug resistance-associated protein 6	0.04	Archaeplastida
LOC_Os03g04920.1	No alias	subfamily ABCC transporter	0.03	LandPlants
Mp4g11950.1	No alias	subfamily ABCC transporter	0.01	LandPlants

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
CC	GO:0016021	integral component of membrane	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR011527	ABC1_TM_dom	979	1221
IPR011527	ABC1_TM_dom	333	600
IPR003439	ABC_transporter-like	1313	1461
IPR003439	ABC_transporter-like	665	799

External Links

No external refs found!

Gb_38871

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation