Gb_38871


Description : subfamily ABCC transporter


Gene families : OG_01_0000058 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000058_tree ,
OG_02_0000437 (LandPlants) Phylogenetic Tree(s): OG_02_0000437_tree ,
OG_03_0000372 (SeedPlants) Phylogenetic Tree(s): OG_03_0000372_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_38871
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00092p00037330 evm_27.TU.AmTr_v1... Solute transport.primary active transport.ABC... 0.04 Archaeplastida
AMTR_s00507p00011670 evm_27.TU.AmTr_v1... Solute transport.primary active transport.ABC... 0.03 Archaeplastida
Cpa|evm.model.tig00000718.2 No alias ABC transporter C family member 2 OS=Arabidopsis thaliana 0.01 Archaeplastida
Cpa|evm.model.tig00000718.3 No alias ABC transporter C family member 6 OS=Arabidopsis thaliana 0.01 Archaeplastida
GSVIVT01019475001 No alias Solute transport.primary active transport.ABC... 0.05 Archaeplastida
GSVIVT01028722001 No alias Solute transport.primary active transport.ABC... 0.03 Archaeplastida
LOC_Os03g04920.1 No alias subfamily ABCC transporter 0.03 Archaeplastida
Mp4g11950.1 No alias subfamily ABCC transporter 0.01 Archaeplastida
Mp5g13230.1 No alias subfamily ABCC transporter 0.02 Archaeplastida
Mp7g13400.1 No alias subfamily ABCC transporter 0.04 Archaeplastida
Mp7g13860.1 No alias subfamily ABCC transporter 0.01 Archaeplastida
Pp3c10_6490V3.1 No alias multidrug resistance-associated protein 6 0.04 Archaeplastida
LOC_Os03g04920.1 No alias subfamily ABCC transporter 0.03 LandPlants
Mp4g11950.1 No alias subfamily ABCC transporter 0.01 LandPlants

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase activity IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 979 1221
IPR011527 ABC1_TM_dom 333 600
IPR003439 ABC_transporter-like 1313 1461
IPR003439 ABC_transporter-like 665 799
No external refs found!