AT2G45890 (ATROPGEF4, RHS11, ROPGEF4)

Aliases : ATROPGEF4, RHS11, ROPGEF4

Description : RHO guanyl-nucleotide exchange factor 4

Gene families : OG0000396 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000396_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G45890

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00182400	ATROPGEF1,...	Multi-process regulation.Rop GTPase regulatory...	0.04	OrthoFinder output from all 47 species
AMTR_s00109p00064220	ROPGEF8,...	Multi-process regulation.Rop GTPase regulatory...	0.04	OrthoFinder output from all 47 species
AMTR_s00165p00047580	ROPGEF7,...	Multi-process regulation.Rop GTPase regulatory...	0.02	OrthoFinder output from all 47 species
AT1G79860	ROPGEF12, MEE64,...	RHO guanyl-nucleotide exchange factor 12	0.07	OrthoFinder output from all 47 species
AT4G13240	ATROPGEF9, ROPGEF9	RHO guanyl-nucleotide exchange factor 9	0.05	OrthoFinder output from all 47 species
AT5G02010	ROPGEF7, ATROPGEF7	RHO guanyl-nucleotide exchange factor 7	0.06	OrthoFinder output from all 47 species
Adi_g019489	ROPGEF7, ATROPGEF7	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g024149	ATROPGEF1, ROPGEF1	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.02	OrthoFinder output from all 47 species
Adi_g066161	ATROPGEF1, ROPGEF1	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.02	OrthoFinder output from all 47 species
Adi_g075365	ROPGEF7, ATROPGEF7	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g15616	ROPGEF7, ATROPGEF7	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.03	OrthoFinder output from all 47 species
Aob_g16920	ROPGEF7, ATROPGEF7	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.04	OrthoFinder output from all 47 species
Aop_g08558	ATROPGEF1, ROPGEF1	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.03	OrthoFinder output from all 47 species
Aop_g13306	ATROPGEF1, ROPGEF1	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.02	OrthoFinder output from all 47 species
Aop_g35625	ROPGEF7, ATROPGEF7	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.03	OrthoFinder output from all 47 species
Aspi01Gene72579.t1	ROPGEF7,...	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.03	OrthoFinder output from all 47 species
Azfi_s0048.g030504	ROPGEF7, ATROPGEF7	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.03	OrthoFinder output from all 47 species
Azfi_s0050.g030989	ATROPGEF1, ROPGEF1	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.03	OrthoFinder output from all 47 species
Azfi_s0358.g066818	ROPGEF7, ATROPGEF7	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.06	OrthoFinder output from all 47 species
Azfi_s0580.g078306	ATROPGEF1, ROPGEF1	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.06	OrthoFinder output from all 47 species
Cba_g12882	ATROPGEF1, ROPGEF1	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.02	OrthoFinder output from all 47 species
Cba_g71087	ATROPGEF1, ROPGEF1	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.03	OrthoFinder output from all 47 species
Ceric.04G001800.1	ROPGEF8,...	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.04	OrthoFinder output from all 47 species
Ceric.08G039100.1	ROPGEF7,...	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.04	OrthoFinder output from all 47 species
Ceric.09G023900.1	ATROPGEF1,...	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.04	OrthoFinder output from all 47 species
Ceric.1Z028300.1	ROPGEF7,...	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.03	OrthoFinder output from all 47 species
Ceric.29G059900.1	ATROPGEF1,...	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.04	OrthoFinder output from all 47 species
Ceric.33G011600.1	ROPGEF7,...	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.03	OrthoFinder output from all 47 species
Dac_g00928	ATROPGEF1, ROPGEF1	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.04	OrthoFinder output from all 47 species
Dac_g07468	ATROPGEF1, ROPGEF1	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.05	OrthoFinder output from all 47 species
Dcu_g13017	ROPGEF7, ATROPGEF7	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.04	OrthoFinder output from all 47 species
Ehy_g18445	ROPGEF7, ATROPGEF7	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.04	OrthoFinder output from all 47 species
GSVIVT01015369001	ROPGEF8, ATROPGEF8	Multi-process regulation.Rop GTPase regulatory...	0.09	OrthoFinder output from all 47 species
GSVIVT01017070001	ROPGEF12, MEE64,...	Multi-process regulation.Rop GTPase regulatory...	0.1	OrthoFinder output from all 47 species
Gb_34956	ATROPGEF1, ROPGEF1	PRONE-type RopGEF guanine nucleotide exchange factor	0.02	OrthoFinder output from all 47 species
LOC_Os01g48410.1	ATROPGEF9,...	PRONE-type RopGEF guanine nucleotide exchange factor	0.08	OrthoFinder output from all 47 species
LOC_Os01g55520.1	ATROPGEF11,...	PRONE-type RopGEF guanine nucleotide exchange factor	0.06	OrthoFinder output from all 47 species
LOC_Os02g17240.1	ROPGEF8,...	PRONE-type RopGEF guanine nucleotide exchange factor	0.05	OrthoFinder output from all 47 species
LOC_Os02g47420.3	ROPGEF14,...	PRONE-type RopGEF guanine nucleotide exchange factor	0.02	OrthoFinder output from all 47 species
LOC_Os05g38000.1	ROPGEF7,...	PRONE-type RopGEF guanine nucleotide exchange factor	0.05	OrthoFinder output from all 47 species
LOC_Os05g48640.1	ROPGEF8,...	PRONE-type RopGEF guanine nucleotide exchange factor	0.03	OrthoFinder output from all 47 species
LOC_Os09g37270.1	ATROPGEF1,...	PRONE-type RopGEF guanine nucleotide exchange factor	0.04	OrthoFinder output from all 47 species
LOC_Os10g40270.1	ROPGEF3,...	PRONE-type RopGEF guanine nucleotide exchange factor	0.09	OrthoFinder output from all 47 species
Lfl_g01871	ROPGEF8, ATROPGEF8	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.04	OrthoFinder output from all 47 species
Lfl_g06173	ATROPGEF1, ROPGEF1	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.04	OrthoFinder output from all 47 species
Lfl_g19262	ATROPGEF1, ROPGEF1	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.03	OrthoFinder output from all 47 species
Msp_g08115	ATROPGEF1, ROPGEF1	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.04	OrthoFinder output from all 47 species
Msp_g26258	ROPGEF7, ATROPGEF7	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.02	OrthoFinder output from all 47 species
Nbi_g08604	ATROPGEF1, ROPGEF1	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.04	OrthoFinder output from all 47 species
Nbi_g15696	ATROPGEF1, ROPGEF1	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.03	OrthoFinder output from all 47 species
Pir_g14467	ROPGEF7, ATROPGEF7	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.03	OrthoFinder output from all 47 species
Pir_g20111	ROPGEF7, ATROPGEF7	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.03	OrthoFinder output from all 47 species
Pir_g56461	ATROPGEF1, ROPGEF1	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.04	OrthoFinder output from all 47 species
Pnu_g19384	ATROPGEF5, ROPGEF5	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g15436	ROPGEF8, ATROPGEF8	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.03	OrthoFinder output from all 47 species
Ppi_g36002	ATROPGEF1, ROPGEF1	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.03	OrthoFinder output from all 47 species
Ppi_g63322	ATROPGEF1, ROPGEF1	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0100.g019675	ROPGEF7, ATROPGEF7	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.03	OrthoFinder output from all 47 species
Sam_g11202	No alias	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.02	OrthoFinder output from all 47 species
Sam_g13603	No alias	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.04	OrthoFinder output from all 47 species
Solyc01g094610.4.1	ROPGEF3,...	PRONE-type RopGEF guanine nucleotide exchange factor	0.07	OrthoFinder output from all 47 species
Solyc01g111930.4.1	ATROPGEF1,...	PRONE-type RopGEF guanine nucleotide exchange factor	0.03	OrthoFinder output from all 47 species
Solyc03g120650.4.1	ROPGEF12, MEE64,...	PRONE-type RopGEF guanine nucleotide exchange factor	0.06	OrthoFinder output from all 47 species
Solyc09g011480.3.1	ROPGEF7,...	PRONE-type RopGEF guanine nucleotide exchange factor	0.03	OrthoFinder output from all 47 species
Solyc12g007150.3.1	ATROPGEF9,...	PRONE-type RopGEF guanine nucleotide exchange factor	0.02	OrthoFinder output from all 47 species
Solyc12g044270.2.1	ROPGEF12, MEE64,...	PRONE-type RopGEF guanine nucleotide exchange factor	0.04	OrthoFinder output from all 47 species
Spa_g12484	ROPGEF7, ATROPGEF7	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.03	OrthoFinder output from all 47 species
Tin_g05160	ATROPGEF1, ROPGEF1	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.03	OrthoFinder output from all 47 species
Tin_g11120	ATROPGEF1, ROPGEF1	RopGEF guanine nucleotide exchange factor *(PRONE) &...	0.03	OrthoFinder output from all 47 species
Zm00001e014205_P002	ROPGEF8,...	PRONE-type RopGEF guanine nucleotide exchange factor	0.06	OrthoFinder output from all 47 species
Zm00001e019750_P001	ROPGEF8,...	PRONE-type RopGEF guanine nucleotide exchange factor	0.07	OrthoFinder output from all 47 species
Zm00001e020182_P002	ATROPGEF9,...	PRONE-type RopGEF guanine nucleotide exchange factor	0.02	OrthoFinder output from all 47 species
Zm00001e024760_P001	ROPGEF8,...	PRONE-type RopGEF guanine nucleotide exchange factor	0.06	OrthoFinder output from all 47 species
Zm00001e026517_P004	ROPGEF8,...	PRONE-type RopGEF guanine nucleotide exchange factor	0.03	OrthoFinder output from all 47 species
Zm00001e034952_P003	ATROPGEF1,...	PRONE-type RopGEF guanine nucleotide exchange factor	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009505	plant-type cell wall	None	Extended
CC	GO:0009531	secondary cell wall	IDA	Interproscan
BP	GO:0009664	plant-type cell wall organization	IMP	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010383	cell wall polysaccharide metabolic process	None	Extended
BP	GO:0010410	hemicellulose metabolic process	None	Extended
BP	GO:0010413	glucuronoxylan metabolic process	RCA	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
BP	GO:0033692	cellular polysaccharide biosynthetic process	None	Extended
BP	GO:0034637	cellular carbohydrate biosynthetic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044036	cell wall macromolecule metabolic process	None	Extended
BP	GO:0044038	cell wall macromolecule biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0045491	xylan metabolic process	None	Extended
BP	GO:0045492	xylan biosynthetic process	RCA	Interproscan
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048767	root hair elongation	IMP	Interproscan
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0070589	cellular component macromolecule biosynthetic process	None	Extended
BP	GO:0070592	cell wall polysaccharide biosynthetic process	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005794	Golgi apparatus	IEP	HCCA
MF	GO:0008417	fucosyltransferase activity	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016757	glycosyltransferase activity	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
BP	GO:0042546	cell wall biogenesis	IEP	HCCA
BP	GO:0048766	root hair initiation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005512	PRONE_dom	93	459

External Links

No external refs found!

AT2G45890 (ATROPGEF4, RHS11, ROPGEF4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation