AT2G44610 (RAB6A, ATRABH1B, ATRAB6A, RAB6)

Aliases : RAB6A, ATRABH1B, ATRAB6A, RAB6

Description : Ras-related small GTP-binding family protein

Gene families : OG0001773 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001773_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G44610

Target	Alias	Description	ECC score	Gene Family Method
Ala_g06784	AtRABH1e, RABH1e	H-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.01G018400.1	AtRABH1e,...	H-class RAB GTPase & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.30G035400.1	AtRABH1e,...	H-class RAB GTPase & original description:...	0.06	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021464.53	AtRABH1e, RABH1e	Vesicle trafficking.regulation of membrane tethering and...	0.01	OrthoFinder output from all 47 species
Cre01.g047550	RAB6A, ATRABH1B,...	Vesicle trafficking.regulation of membrane tethering and...	0.07	OrthoFinder output from all 47 species
Dcu_g07473	AtRABH1e, RABH1e	H-class RAB GTPase & original description: none	0.08	OrthoFinder output from all 47 species
Ehy_g09589	AtRABH1e, RABH1e	H-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g13691	AtRABH1e, RABH1e	H-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01013222001	RAB6A, ATRABH1B,...	Vesicle trafficking.regulation of membrane tethering and...	0.05	OrthoFinder output from all 47 species
GSVIVT01018361001	RAB6A, ATRABH1B,...	Vesicle trafficking.regulation of membrane tethering and...	0.04	OrthoFinder output from all 47 species
LOC_Os07g31370.1	RAB6A, ATRABH1B,...	H-class RAB GTPase	0.07	OrthoFinder output from all 47 species
Len_g58410	AtRABH1e, RABH1e	H-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Mp5g03960.1	AtRABH1e, RABH1e	H-class RAB GTPase	0.03	OrthoFinder output from all 47 species
Nbi_g21059	AtRABH1e, RABH1e	H-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Smo145680	AtRABH1e, RABH1e	Vesicle trafficking.regulation of membrane tethering and...	0.03	OrthoFinder output from all 47 species
Spa_g05988	AtRABH1e, RABH1e	H-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g15125	AtRABH1e, RABH1e	H-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g01599	AtRABH1e, RABH1e	H-class RAB GTPase & original description: none	0.08	OrthoFinder output from all 47 species
Zm00001e010425_P001	RAB6A, ATRABH1B,...	H-class RAB GTPase	0.03	OrthoFinder output from all 47 species
Zm00001e035034_P001	RAB6A, ATRABH1B,...	H-class RAB GTPase	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000139	Golgi membrane	IDA	Interproscan
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
MF	GO:0005525	GTP binding	IDA	Interproscan
MF	GO:0005525	GTP binding	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005768	endosome	IDA	Interproscan
CC	GO:0005774	vacuolar membrane	IDA	Interproscan
CC	GO:0005794	Golgi apparatus	IDA	Interproscan
CC	GO:0005794	Golgi apparatus	ISM	Interproscan
CC	GO:0005802	trans-Golgi network	IDA	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006891	intra-Golgi vesicle-mediated transport	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016192	vesicle-mediated transport	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
CC	GO:0030054	cell junction	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031410	cytoplasmic vesicle	None	Extended
CC	GO:0031982	vesicle	None	Extended
CC	GO:0031984	organelle subcompartment	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
BP	GO:0032940	secretion by cell	IGI	Interproscan
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0046903	secretion	None	Extended
BP	GO:0048193	Golgi vesicle transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0097708	intracellular vesicle	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0098791	Golgi apparatus subcompartment	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140352	export from cell	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003779	actin binding	IEP	HCCA
MF	GO:0004382	GDP phosphatase activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
BP	GO:0005513	detection of calcium ion	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005795	Golgi stack	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0005996	monosaccharide metabolic process	IEP	HCCA
BP	GO:0006863	purine nucleobase transport	IEP	HCCA
BP	GO:0008064	regulation of actin polymerization or depolymerization	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0008514	organic anion transmembrane transporter activity	IEP	HCCA
BP	GO:0009593	detection of chemical stimulus	IEP	HCCA
CC	GO:0009705	plant-type vacuole membrane	IEP	HCCA
BP	GO:0009846	pollen germination	IEP	HCCA
BP	GO:0010038	response to metal ion	IEP	HCCA
BP	GO:0010118	stomatal movement	IEP	HCCA
BP	GO:0010639	negative regulation of organelle organization	IEP	HCCA
MF	GO:0015252	proton channel activity	IEP	HCCA
BP	GO:0015851	nucleobase transport	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
MF	GO:0016757	glycosyltransferase activity	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
MF	GO:0017110	nucleoside diphosphate phosphatase activity	IEP	HCCA
BP	GO:0019321	pentose metabolic process	IEP	HCCA
BP	GO:0019722	calcium-mediated signaling	IEP	HCCA
BP	GO:0019932	second-messenger-mediated signaling	IEP	HCCA
MF	GO:0022857	transmembrane transporter activity	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
CC	GO:0030118	clathrin coat	IEP	HCCA
CC	GO:0030120	vesicle coat	IEP	HCCA
CC	GO:0030125	clathrin vesicle coat	IEP	HCCA
BP	GO:0030243	cellulose metabolic process	IEP	HCCA
BP	GO:0030244	cellulose biosynthetic process	IEP	HCCA
BP	GO:0030832	regulation of actin filament length	IEP	HCCA
BP	GO:0030833	regulation of actin filament polymerization	IEP	HCCA
BP	GO:0030834	regulation of actin filament depolymerization	IEP	HCCA
BP	GO:0030835	negative regulation of actin filament depolymerization	IEP	HCCA
BP	GO:0030837	negative regulation of actin filament polymerization	IEP	HCCA
BP	GO:0031333	negative regulation of protein-containing complex assembly	IEP	HCCA
BP	GO:0032271	regulation of protein polymerization	IEP	HCCA
BP	GO:0032272	negative regulation of protein polymerization	IEP	HCCA
BP	GO:0032535	regulation of cellular component size	IEP	HCCA
BP	GO:0032956	regulation of actin cytoskeleton organization	IEP	HCCA
BP	GO:0032970	regulation of actin filament-based process	IEP	HCCA
BP	GO:0042732	D-xylose metabolic process	IEP	HCCA
BP	GO:0043242	negative regulation of protein-containing complex disassembly	IEP	HCCA
BP	GO:0043244	regulation of protein-containing complex disassembly	IEP	HCCA
BP	GO:0043254	regulation of protein-containing complex assembly	IEP	HCCA
BP	GO:0044087	regulation of cellular component biogenesis	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
MF	GO:0045134	UDP phosphatase activity	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	HCCA
MF	GO:0047262	polygalacturonate 4-alpha-galacturonosyltransferase activity	IEP	HCCA
MF	GO:0051015	actin filament binding	IEP	HCCA
BP	GO:0051017	actin filament bundle assembly	IEP	HCCA
BP	GO:0051129	negative regulation of cellular component organization	IEP	HCCA
BP	GO:0051273	beta-glucan metabolic process	IEP	HCCA
BP	GO:0051274	beta-glucan biosynthetic process	IEP	HCCA
BP	GO:0051493	regulation of cytoskeleton organization	IEP	HCCA
BP	GO:0051494	negative regulation of cytoskeleton organization	IEP	HCCA
BP	GO:0051592	response to calcium ion	IEP	HCCA
BP	GO:0051693	actin filament capping	IEP	HCCA
BP	GO:0055065	metal ion homeostasis	IEP	HCCA
BP	GO:0055075	potassium ion homeostasis	IEP	HCCA
BP	GO:0061572	actin filament bundle organization	IEP	HCCA
BP	GO:0090066	regulation of anatomical structure size	IEP	HCCA
BP	GO:0098771	inorganic ion homeostasis	IEP	HCCA
BP	GO:0110053	regulation of actin filament organization	IEP	HCCA
BP	GO:1901879	regulation of protein depolymerization	IEP	HCCA
BP	GO:1901880	negative regulation of protein depolymerization	IEP	HCCA
BP	GO:1902903	regulation of supramolecular fiber organization	IEP	HCCA
BP	GO:1902904	negative regulation of supramolecular fiber organization	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	11	169

External Links

No external refs found!

AT2G44610 (RAB6A, ATRABH1B, ATRAB6A, RAB6)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation