AT2G42720

Description : FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein

Gene families : OG0003469 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003469_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G42720
Cluster	HCCA: Cluster_31

Target	Alias	Description	ECC score	Gene Family Method
AT1G48400	No alias	F-box/RNI-like/FBD-like domains-containing protein	0.02	OrthoFinder output from all 47 species
AT1G52650	No alias	F-box/RNI-like superfamily protein	0.04	OrthoFinder output from all 47 species
AT2G29930	No alias	F-box/RNI-like superfamily protein	0.09	OrthoFinder output from all 47 species
AT3G44060	No alias	F-box/RNI-like superfamily protein	0.04	OrthoFinder output from all 47 species
AT3G44080	No alias	F-box family protein	0.03	OrthoFinder output from all 47 species
AT3G44090	No alias	F-box family protein	0.04	OrthoFinder output from all 47 species
AT3G44180	No alias	syntaxin-related family protein	0.02	OrthoFinder output from all 47 species
AT3G44810	No alias	F-box family protein	0.05	OrthoFinder output from all 47 species
AT3G49150	No alias	F-box/RNI-like superfamily protein	0.04	OrthoFinder output from all 47 species
AT3G54160	No alias	RNI-like superfamily protein	0.06	OrthoFinder output from all 47 species
AT3G58820	No alias	F-box/RNI-like superfamily protein	0.04	OrthoFinder output from all 47 species
AT3G58880	No alias	F-box/RNI-like superfamily protein	0.07	OrthoFinder output from all 47 species
AT3G58920	No alias	F-box/RNI-like superfamily protein	0.02	OrthoFinder output from all 47 species
AT3G58960	No alias	F-box/RNI-like/FBD-like domains-containing protein	0.05	OrthoFinder output from all 47 species
AT3G59160	No alias	F-box/RNI-like superfamily protein	0.03	OrthoFinder output from all 47 species
AT3G59170	No alias	F-box/RNI-like superfamily protein	0.04	OrthoFinder output from all 47 species
AT3G59230	No alias	RNI-like superfamily protein	0.11	OrthoFinder output from all 47 species
AT3G59240	No alias	RNI-like superfamily protein	0.11	OrthoFinder output from all 47 species
AT3G62440	No alias	F-box/RNI-like superfamily protein	0.09	OrthoFinder output from all 47 species
AT5G15620	No alias	F-box/RNI-like superfamily protein	0.1	OrthoFinder output from all 47 species
AT5G25860	No alias	F-box/RNI-like superfamily protein	0.12	OrthoFinder output from all 47 species
AT5G35926	No alias	Protein with RNI-like/FBD-like domains	0.08	OrthoFinder output from all 47 species
AT5G38396	No alias	F-box/RNI-like superfamily protein	0.09	OrthoFinder output from all 47 species
AT5G41630	No alias	F-box/RNI-like superfamily protein	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000003	reproduction	None	Extended
BP	GO:0000723	telomere maintenance	None	Extended
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	RCA	Interproscan
BP	GO:0006310	DNA recombination	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007059	chromosome segregation	RCA	Interproscan
BP	GO:0007062	sister chromatid cohesion	RCA	Interproscan
BP	GO:0007129	homologous chromosome pairing at meiosis	RCA	Interproscan
BP	GO:0007131	reciprocal meiotic recombination	RCA	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010212	response to ionizing radiation	None	Extended
BP	GO:0010332	response to gamma radiation	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031047	RNA-mediated gene silencing	None	Extended
BP	GO:0031048	RNA-mediated heterochromatin formation	RCA	Interproscan
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031507	heterochromatin formation	None	Extended
BP	GO:0032200	telomere organization	None	Extended
BP	GO:0032204	regulation of telomere maintenance	RCA	Interproscan
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032504	multicellular organism reproduction	RCA	Interproscan
BP	GO:0033043	regulation of organelle organization	None	Extended
BP	GO:0033044	regulation of chromosome organization	RCA	Interproscan
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035825	homologous recombination	None	Extended
BP	GO:0040029	epigenetic regulation of gene expression	None	Extended
BP	GO:0042138	meiotic DNA double-strand break formation	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043247	telomere maintenance in response to DNA damage	RCA	Interproscan
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0045132	meiotic chromosome segregation	RCA	Interproscan
BP	GO:0045814	negative regulation of gene expression, epigenetic	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051052	regulation of DNA metabolic process	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0061982	meiosis I cell cycle process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	None	Extended
BP	GO:0070828	heterochromatin organization	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	None	Extended
BP	GO:0098813	nuclear chromosome segregation	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140527	reciprocal homologous recombination	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1903046	meiotic cell cycle process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005244	voltage-gated monoatomic ion channel activity	IEP	HCCA
MF	GO:0005253	monoatomic anion channel activity	IEP	HCCA
CC	GO:0005741	mitochondrial outer membrane	IEP	HCCA
BP	GO:0006820	monoatomic anion transport	IEP	HCCA
MF	GO:0008308	voltage-gated monoatomic anion channel activity	IEP	HCCA
MF	GO:0008509	monoatomic anion transmembrane transporter activity	IEP	HCCA
BP	GO:0010098	suspensor development	IEP	HCCA
MF	GO:0022832	voltage-gated channel activity	IEP	HCCA
MF	GO:0045735	nutrient reservoir activity	IEP	HCCA
BP	GO:0048598	embryonic morphogenesis	IEP	HCCA
BP	GO:0080159	zygote elongation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013101	Leu-rich_rpt_2	159	185
IPR001810	F-box_dom	3	37

External Links

No external refs found!

AT2G42720

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation